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r-gdtools
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public |
No Summary
|
2025-03-25 |
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curesim
|
public |
No Summary
|
2025-03-25 |
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starseqr
|
public |
RNA Fusion Detection and Quantification
|
2025-03-25 |
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rabix-bunny
|
public |
Open-source development kit for the Common Workflow Language from Seven Bridges. The Rabix executor Bunny, which can be used to execute apps locally from the command line.
|
2025-03-25 |
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gffread
|
public |
GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more.
|
2025-03-25 |
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spingo
|
public |
No Summary
|
2025-03-25 |
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prophyle
|
public |
ProPhyle is an accurate, resource-frugal and deterministic phylogeny-based metagenomic classifier.
|
2025-03-25 |
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wgsim
|
public |
No Summary
|
2025-03-25 |
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r-fnn
|
public |
No Summary
|
2025-03-25 |
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bioconductor-ipo
|
public |
Automated Optimization of XCMS Data Processing parameters
|
2025-03-25 |
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mgs-canopy
|
public |
No Summary
|
2025-03-25 |
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r-speaq
|
public |
Makes Nuclear Magnetic Resonance spectroscopy (NMR spectroscopy) data analysis as easy as possible by only requiring a small set of functions to perform an entire analysis. 'speaq' offers the possibility of raw spectra alignment and quantitation but also an analysis based on features whereby the spectra are converted to peaks which are then grouped and turned into features. These features can be processed with any number of statistical tools either included in 'speaq' or available elsewhere on CRAN. More detail can be found in Vu et al. (2011) <doi:10.1186/1471-2105-12-405> and Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018>.
|
2025-03-25 |
|
shapemapper
|
public |
No Summary
|
2025-03-25 |
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ray
|
public |
No Summary
|
2025-03-25 |
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ghmm
|
public |
No Summary
|
2025-03-25 |
|
graftm
|
public |
GraftM is a pipeline used for identifying and classifying marker gene reads from metagenomic datasets
|
2025-03-25 |
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extern
|
public |
No Summary
|
2025-03-25 |
|
gffcompare
|
public |
GffCompare by Geo Pertea
|
2025-03-25 |
|
seqmagick
|
public |
Tools for converting and modifying sequence files from the command-line
|
2025-03-25 |
|
bioconductor-synergyfinder
|
public |
Calculate and Visualize Synergy Scores for Drug Combinations
|
2025-03-25 |
|
r-drc
|
public |
No Summary
|
2025-03-25 |
|
r-nleqslv
|
public |
No Summary
|
2025-03-25 |
|
r-kriging
|
public |
No Summary
|
2025-03-25 |
|
gclib
|
public |
No Summary
|
2025-03-25 |
|
ensembl-vep
|
public |
Ensembl Variant Effect Predictor
|
2025-03-25 |
|
fastahack
|
public |
No Summary
|
2025-03-25 |
|
wub
|
public |
Tools and software library developed by the ONT Applications group
|
2025-03-25 |
|
canvas
|
public |
Copy number variant (CNV) calling from DNA sequencing data
|
2025-03-25 |
|
survivor
|
public |
Toolset for SV simulation, comparison and filtering
|
2025-03-25 |
|
mergevcf
|
public |
No Summary
|
2025-03-25 |
|
ngsutils
|
public |
No Summary
|
2025-03-25 |
|
swalign
|
public |
Smith-Waterman local aligner
|
2025-03-25 |
|
eta
|
public |
No Summary
|
2025-03-25 |
|
intervaltree_bio
|
public |
No Summary
|
2025-03-25 |
|
minepy
|
public |
minepy - Maximal Information-based Nonparametric Exploration
|
2025-03-25 |
|
shorah
|
public |
The Short Reads Assembly into Haplotypes (ShoRAH) program for inferring viral haplotypes from NGS data
|
2025-03-25 |
|
bioconductor-pcaexplorer
|
public |
Interactive Visualization of RNA-seq Data Using a Principal Components Approach
|
2025-03-25 |
|
r-d3heatmap
|
public |
No Summary
|
2025-03-25 |
|
r-shinyace
|
public |
No Summary
|
2025-03-25 |
|
mobster
|
public |
NGS tool for detecting MEI and gene retrotransposition events in WGS and WES data, see Thung et al. Genome Biol. 2014 for more information.
|
2025-03-25 |
|
perl-tie-hash-indexed
|
public |
Ordered hashes for Perl
|
2025-03-25 |
|
damidseq_pipeline
|
public |
An automated pipeline for processing DamID sequencing datasets.
|
2025-03-25 |
|
music
|
public |
No Summary
|
2025-03-25 |
|
seq-gen
|
public |
Seq-Gen is a program that will simulate the evolution of nucleotide or amino acid sequences along a phylogeny, using common models of the substitution process.
|
2025-03-25 |
|
riboplot
|
public |
No Summary
|
2025-03-25 |
|
garnet
|
public |
UNKNOWN
|
2025-03-25 |
|
bioconductor-massspecwavelet
|
public |
Peak Detection for Mass Spectrometry data using wavelet-based algorithms
|
2025-03-25 |
|
r-rann
|
public |
No Summary
|
2025-03-25 |
|
r-waveslim
|
public |
No Summary
|
2025-03-25 |
|
r-cimpl
|
public |
No Summary
|
2025-03-25 |
