Given a group of genomes and their relationship with each other, the package clusters the genomes and selects the most representative members of each cluster. Additional data can be provided to the prioritize certain genomes. The results can be printed out as a list or a new phylogeny with graphs of the trees and distance distributions also available. For detailed introduction see: Thomas H Clarke, Lauren M Brinkac, Granger Sutton, and Derrick E Fouts (2018), GGRaSP: a R-package for selecting representative genomes using Gaussian mixture models, Bioinformatics, bty300, <doi:10.1093/bioinformatics/bty300>.

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.0
  • osx-64  v1.0
To install this package with conda run one of the following:
conda install -c bioconda r-ggrasp
conda install -c bioconda/label/gcc7 r-ggrasp
conda install -c bioconda/label/cf201901 r-ggrasp

Description

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