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bioconductor-deseq2
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public |
Differential gene expression analysis based on the negative binomial distribution
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2024-05-30 |
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bioconductor-cner
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public |
CNE Detection and Visualization
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2024-05-30 |
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bioconductor-diffbind
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public |
Differential Binding Analysis of ChIP-Seq Peak Data
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2024-05-30 |
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bioconductor-tfbstools
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public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis
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2024-05-30 |
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bioconductor-contibait
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public |
Improves Early Build Genome Assemblies using Strand-Seq Data
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2024-05-30 |
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bioconductor-chipcomp
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public |
Quantitative comparison of multiple ChIP-seq datasets
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2024-05-30 |
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bioconductor-biovizbase
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public |
Basic graphic utilities for visualization of genomic data.
|
2024-05-30 |
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bioconductor-flagme
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public |
Analysis of Metabolomics GC/MS Data
|
2024-05-29 |
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bioconductor-genomation
|
public |
Summary, annotation and visualization of genomic data
|
2024-05-29 |
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bioconductor-gsva
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public |
Gene Set Variation Analysis for Microarray and RNA-Seq Data
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2024-05-29 |
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bioconductor-casper
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public |
Characterization of Alternative Splicing based on Paired-End Reads
|
2024-05-29 |
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bioconductor-qpgraph
|
public |
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
|
2024-05-29 |
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bioconductor-bsseq
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public |
Analyze, manage and store bisulfite sequencing data
|
2024-05-29 |
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bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2024-05-29 |
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bioconductor-cntools
|
public |
Convert segment data into a region by sample matrix to allow for other high level computational analyses.
|
2024-05-29 |
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msstitch
|
public |
MS proteomics post processing utilities
|
2024-05-28 |
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bioconductor-csaw
|
public |
ChIP-Seq Analysis with Windows
|
2024-05-28 |
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kissplice
|
public |
A local transcriptome assembler for SNPs, indels and AS events
|
2024-05-28 |
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bioconductor-exomecopy
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public |
Copy number variant detection from exome sequencing read depth
|
2024-05-28 |
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bioconductor-interactionset
|
public |
Base Classes for Storing Genomic Interaction Data
|
2024-05-28 |
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bioconductor-camera
|
public |
Collection of annotation related methods for mass spectrometry data
|
2024-05-28 |
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bioconductor-gosemsim
|
public |
GO-terms Semantic Similarity Measures
|
2024-05-28 |
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bioconductor-xcms
|
public |
LC-MS and GC-MS Data Analysis
|
2024-05-28 |
|
bioconductor-chipseq
|
public |
chipseq: A package for analyzing chipseq data
|
2024-05-28 |
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bioconductor-methylkit
|
public |
DNA methylation analysis from high-throughput bisulfite sequencing results
|
2024-05-28 |
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bioconductor-girafe
|
public |
Genome Intervals and Read Alignments for Functional Exploration
|
2024-05-28 |
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bioconductor-variantannotation
|
public |
Annotation of Genetic Variants
|
2024-05-28 |
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bioconductor-genefilter
|
public |
genefilter: methods for filtering genes from high-throughput experiments
|
2024-05-28 |
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bioconductor-sva
|
public |
Surrogate Variable Analysis
|
2024-05-28 |
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perl-math-bigint
|
public |
Arbitrary size floating point math package
|
2024-05-28 |
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smallgenomeutilities
|
public |
A collection of scripts that are useful for dealing with viral RNA NGS data.
|
2024-05-27 |
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star-fusion
|
public |
STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included.
|
2024-05-27 |
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bioconductor-rtracklayer
|
public |
R interface to genome annotation files and the UCSC genome browser
|
2024-05-27 |
|
toil
|
public |
A scalable, efficient, cross-platform and easy-to-use workflow engine in pure Python
|
2024-05-24 |
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bioconductor-shortread
|
public |
FASTQ input and manipulation
|
2024-05-24 |
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bioconductor-rsamtools
|
public |
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
|
2024-05-24 |
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bioconductor-genomicalignments
|
public |
Representation and manipulation of short genomic alignments
|
2024-05-24 |
|
snpeff
|
public |
Genetic variant annotation and effect prediction toolbox
|
2024-05-23 |
|
krakenuniq
|
public |
Metagenomics classifier with unique k-mer counting for more specific results
|
2024-05-23 |
|
bioconductor-hdf5array
|
public |
HDF5 backend for DelayedArray objects
|
2024-05-10 |
|
bioconductor-chromdraw
|
public |
chromDraw is a R package for drawing the schemes of karyotypes in the linear and circular fashion.
|
2024-05-10 |
|
bioconductor-bamsignals
|
public |
Extract read count signals from bam files
|
2024-05-10 |
|
bioconductor-bcrank
|
public |
Predicting binding site consensus from ranked DNA sequences
|
2024-05-10 |
|
bioconductor-rhdf5
|
public |
R Interface to HDF5
|
2024-05-10 |
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bioconductor-beachmat
|
public |
Compiling Bioconductor to Handle Each Matrix Type
|
2024-05-10 |
|
pymzml
|
public |
high-throughput mzML parsing
|
2024-05-10 |
|
bioconductor-flowsom
|
public |
Using self-organizing maps for visualization and interpretation of cytometry data
|
2024-05-10 |
|
bioconductor-msnbase
|
public |
Base Functions and Classes for Mass Spectrometry and Proteomics
|
2024-05-10 |
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bioconductor-metaseq
|
public |
Meta-analysis of RNA-Seq count data in multiple studies
|
2024-05-10 |
|
bioconductor-maigespack
|
public |
Functions to handle cDNA microarray data, including several methods of data analysis
|
2024-05-10 |
