| Package Name | Access | Summary | Updated |
|---|---|---|---|
| prodigal | public | Prodigal (Prokaryotic Dynamic Programming Genefinding Algorithm) is a microbial (bacterial and archaeal) gene finding program | 2025-07-17 |
| perl-experimental | public | Experimental features made easy | 2025-07-17 |
| transdecoder | public | TransDecoder identifies candidate coding regions within transcript sequences, such as those generated by de novo RNA-Seq transcript assembly using Trinity, or constructed based on RNA-Seq alignments to the genome using Tophat and Cufflinks. | 2025-07-16 |
| slclust | public | A utility that performs single-linkage clustering with the option of applying a Jaccard similarity coefficient to break weakly bound clusters into distinct clusters. | 2025-07-16 |
| tn93 | public | This is a simple program meant to compute pairwise distances between aligned nucleotide sequences in sequential FASTA format using the Tamura Nei 93 distance. | 2025-07-16 |
| star-fusion | public | STAR-Fusion fusion variant caller. All dependencies required to run FusionInspector and FusionAnnotator are included. | 2025-07-16 |
| searchgui | public | User-friendly graphical tool for using proteomics identification search engines. | 2025-07-16 |
| scoop | public | Scalable COncurrent Operations in Python. | 2025-07-16 |
| wheezy.template | public | A lightweight template library. | 2025-07-16 |
| maxentpy | public | maxentpy is a python wrapper for MaxEntScan to calculate splice site strength. | 2025-07-16 |
| mapdamage2 | public | mapDamage: tracking and quantifying damage patterns in ancient DNA sequencing reads generated by Next-Generation Sequencing platforms. | 2025-07-16 |
| kleborate | public | Kleborate: a tool for typing and screening pathogen genome assemblies. | 2025-07-15 |
| hgtools | public | Classes for Mercurial and Git repositories. | 2025-07-15 |
| gffcompare | public | GffCompare by Geo Pertea. | 2025-07-15 |
| perl-inline | public | Write Perl Subroutines in Other Programming Languages. | 2025-07-15 |
| synapseclient | public | Python client for Synapse. | 2025-07-15 |
| r-rblast | public | Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute. | 2025-07-15 |
| ucsc-hgloadbed | public | Load a generic bed file into database. | 2025-07-15 |
| ucsc-hgspeciesrna | public | Create fasta file with RNA from one species. | 2025-07-15 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-07-14 |
| ucsc-paranodestatus | public | Check status of paraNode on a list of machines. | 2025-07-14 |
| ucsc-parahubstop | public | Shut down paraHub daemon. | 2025-07-14 |
| ucsc-paranode | public | Parasol node server. | 2025-07-14 |
| ucsc-paranodestop | public | Shut down parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-paranodestart | public | Start up parasol node daemons on a list of machines. | 2025-07-14 |
