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bioconda / packages / r-shazam 1.1.2

Provides a computational framework for analyzing mutations in immunoglobulin (Ig) sequences. Includes methods for Bayesian estimation of antigen-driven selection pressure, mutational load quantification, building of somatic hypermutation (SHM) models, and model-dependent distance calculations. Also includes empirically derived models of SHM for both mice and humans. Citations: Gupta and Vander Heiden, et al (2015) <doi:10.1093/bioinformatics/btv359>, Yaari, et al (2012) <doi:10.1093/nar/gks457>, Yaari, et al (2013) <doi:10.3389/fimmu.2013.00358>, Cui, et al (2016) <doi:10.4049/jimmunol.1502263>.

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v0.1.11
  • osx-64 v0.1.11
  • noarch v1.1.2

conda install

To install this package run one of the following:
conda install bioconda::r-shazam
conda install bioconda/label/cf201901::r-shazam
conda install bioconda/label/gcc7::r-shazam

Description


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