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bioconductor-bayseq
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public |
Empirical Bayesian analysis of patterns of differential expression in count data
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2025-04-22 |
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r-cnogpro
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public |
Methods for assigning copy number states and breakpoints in resequencing experiments of prokaryotic organisms.
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2025-04-22 |
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r-mlgt
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public |
Processing and analysis of high throughput (Roche 454) sequences generated from multiple loci and multiple biological samples. Sequences are assigned to their locus and sample of origin, aligned and trimmed. Where possible, genotypes are called and variants mapped to known alleles.
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2025-04-22 |
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bioconductor-biocworkflowtools
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public |
Tools to aid the development of Bioconductor Workflow packages
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2025-04-22 |
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pycoqc
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public |
PycoQC computes metrics and generates interactive QC plots for Oxford Nanopore technologies sequencing data
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2025-04-22 |
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r-gpseq
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public |
Some functions for modeling sequence read counts as a generalized poisson model and to use this model for detecting differentially expressed genes in different conditions and differentially spliced exons.
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2025-04-22 |
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minvar
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public |
A tool to detect minority variants in HIV-1 and HCV populations
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2025-04-22 |
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apoc
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public |
Large-scale structural comparison of protein pockets
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2025-04-22 |
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perl-bio-eutilities
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public |
Webagent which interacts with and retrieves data from NCBI eUtils.
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2025-04-22 |
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perl-tie-log4perl
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public |
Tie a filehandle to log via Log4perl
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2025-04-22 |
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intervene
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public |
A tool for intersection of multiple gene or genomic region sets and visualization as venn diagrams, UpSet plots or pariwaise heatmaps
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2025-04-22 |
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hlaprofiler
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public |
HLAProfiler uses k-mer profiles to predict HLA types from paired-end RNA-seq data.
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2025-04-22 |
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xxhash
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public |
Python binding for xxHash
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2025-04-22 |
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xdg
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public |
Variables defined by the XDG Base Directory Specification
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2025-04-22 |
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netreg
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public |
netReg fits linear regression models using network-penalization.
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2025-04-22 |
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arb-bio
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public |
ARB 6 Sequence Analysis Suite
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2025-04-22 |
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phyml
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public |
Phylogenetic estimation using (Maximum) Likelihood
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2025-04-22 |
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indelfixer
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public |
A sensitive aligner for 454, Illumina and PacBio data, employing a full Smith-Waterman alignment against a reference.
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2025-04-22 |
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peakachu
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public |
Peak calling tool for CLIP-seq data.
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2025-04-22 |
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cmv
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public |
A collection of tools for the visualisation of Hidden Markov Models (HMMV) and RNA-family models (CMV).
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2025-04-22 |
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mrbayes
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public |
Bayesian Inference of Phylogeny
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2025-04-22 |
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r-rematch2
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public |
Wrappers on 'regexpr' and 'gregexpr' to return the match results in tidy data frames.
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2025-04-22 |
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json_collect_data_source
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public |
This tool is able to receive multiple datasets (optionally with their metadata) in a single query. As an extension of the galaxy-json-data-source tool (https://github.com/mdshw5/galaxy-json-data-source), it allows to handle archives (gz, bz2, tar, and zip) organizing their content in a collection.
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2025-04-22 |
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bioconductor-risa
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public |
Converting experimental metadata from ISA-tab into Bioconductor data structures
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2025-04-22 |
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bioconductor-biocviews
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public |
Categorized views of R package repositories
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2025-04-22 |
