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r-rentrez
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public |
Provides an R interface to the NCBI's EUtils API allowing users to search databases
like GenBank and PubMed, process the results of those searches and pull data into
their R sessions.
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2025-04-22 |
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bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19
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public |
Annotation for Illumina's 450k methylation arrays
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2025-04-22 |
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outrigger
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public |
Outrigger detects *de novo* exons and quantifies their percent spliced-in
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2025-04-22 |
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perl-test-trap
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public |
Trap exit codes, exceptions, output, etc.
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2025-04-22 |
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perl-data-dump
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public |
Pretty printing of data structures
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2025-04-22 |
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tadarida-c
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public |
Tadarida-C (Toolbox for Animal Detection on Acoustic Recordings - Classification part) for Galaxy use.
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2025-04-22 |
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scg
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public |
The single cell genotyper (SCG): "Roth A, McPherson A, Laks E, Biele J, Yap D, Wan A, et al. Clonal genotype and population structure inference from single-cell tumor sequencing. Nat Meth. 2016;13: 573–576. doi:10.1038/nmeth.3867"
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2025-04-22 |
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taxmapper
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public |
Analysis pipeline for metagenomic, microeukaryotic sequencing data.
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2025-04-22 |
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csb
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public |
Computational Structural Biology Toolbox
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2025-04-22 |
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bioconductor-methylseekr
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public |
Segmentation of Bis-seq data
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2025-04-22 |
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r-micropan
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public |
A collection of functions for computations and visualizations of microbial pan-genomes.
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2025-04-22 |
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embassy-phylip
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public |
embassy/emboss wrappers for phylip functions
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2025-04-22 |
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trawler
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public |
Trawler is a motif discovery tool used to identify enriched motifs in a set of sequenced regions of DNA.
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2025-04-22 |
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gadem
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public |
A Genetic Algorithm Guided Formation of Spaced Dyads Coupled with an EM Algorithm for Motif Discovery
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2025-04-22 |
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bioconductor-exomecopy
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public |
Copy number variant detection from exome sequencing read depth
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2025-04-22 |
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bioconductor-degseq
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public |
Identify Differentially Expressed Genes from RNA-seq data
|
2025-04-22 |
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bioconductor-globalseq
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public |
Global Test for Counts
|
2025-04-22 |
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genonets
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public |
Framework for creating and analyzing genotype networks from data.
|
2025-04-22 |
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bioconductor-chronos
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public |
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
|
2025-04-22 |
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bioconductor-cqn
|
public |
Conditional quantile normalization
|
2025-04-22 |
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r-openxlsx
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public |
Simplifies the creation of Excel .xlsx files by providing a high level interface to writing, styling and editing worksheets. Through the use of 'Rcpp', read/write times are comparable to the 'xlsx' and 'XLConnect' packages with the added benefit of removing the dependency on Java.
|
2025-04-22 |
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bioconductor-bayseq
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public |
Empirical Bayesian analysis of patterns of differential expression in count data
|
2025-04-22 |
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r-cnogpro
|
public |
Methods for assigning copy number states and breakpoints in resequencing experiments of prokaryotic organisms.
|
2025-04-22 |
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r-mlgt
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public |
Processing and analysis of high throughput (Roche 454) sequences generated from multiple loci and multiple biological samples. Sequences are assigned to their locus and sample of origin, aligned and trimmed. Where possible, genotypes are called and variants mapped to known alleles.
|
2025-04-22 |
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bioconductor-biocworkflowtools
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public |
Tools to aid the development of Bioconductor Workflow packages
|
2025-04-22 |
