bioconda / packages / bioconductor-exomecopy 1.34.0

Copy number variant detection from exome sequencing read depth

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.34.0
  • osx-64  v1.34.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-exomecopy
conda install -c bioconda/label/gcc7 bioconductor-exomecopy
conda install -c bioconda/label/cf201901 bioconductor-exomecopy

Description

Detection of copy number variants (CNV) from exome sequencing samples, including unpaired samples. The package implements a hidden Markov model which uses positional covariates, such as background read depth and GC-content, to simultaneously normalize and segment the samples into regions of constant copy count.

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