|
trumicount
|
public |
For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably.
|
2024-12-14 |
|
perl-class-methodmaker
|
public |
Create generic methods for OO Perl
|
2024-12-14 |
|
d4binding
|
public |
The C/C++ binding for the D4 file format.
|
2024-12-14 |
|
libmaus2
|
public |
Collection of data structures and algorithms for NGS data.
|
2024-12-14 |
|
mykatlas
|
public |
Assists in discoveries of antibiotic-resistance with mykrobe
|
2024-12-14 |
|
das_tool
|
public |
Recovery of genomes from metagenomes via a dereplication,
aggregation and scoring strategy.
|
2024-12-14 |
|
r-eztune
|
public |
Contains two functions that are intended to make tuning supervised learning methods easy. The eztune function uses a genetic algorithm or Hooke-Jeeves optimizer to find the best set of tuning parameters. The user can choose the optimizer, the learning method, and if optimization will be based on accuracy obtained through validation error, cross validation, or resubstitution. The function eztune.cv will compute a cross validated error rate. The purpose of eztune_cv is to provide a cross validated accuracy or MSE when resubstitution or validation data are used for optimization because error measures from both approaches can be misleading.
|
2024-12-14 |
|
bioconductor-intramirexplorer
|
public |
Predicting Targets for Drosophila Intragenic miRNAs
|
2024-12-14 |
|
pybedlite
|
public |
Lightweight python classes for interfacing with bed intervals
|
2024-12-14 |
|
bioconductor-rbwa
|
public |
R wrapper for BWA-backtrack and BWA-MEM aligners
|
2024-12-14 |
|
bioconductor-sparsematrixstats
|
public |
Summary Statistics for Rows and Columns of Sparse Matrices
|
2024-12-14 |
|
cassiopeia
|
public |
The Cython compiler for writing C extensions in the Python language.
|
2024-12-14 |
|
bioconductor-biocworkflowtools
|
public |
Tools to aid the development of Bioconductor Workflow packages
|
2024-12-14 |
|
bioconductor-illuminaio
|
public |
Parsing Illumina Microarray Output Files
|
2024-12-14 |
|
short-read-connector
|
public |
Short read connector enables the comparisons of two read sets
|
2024-12-14 |
|
bioconductor-hyper
|
public |
An R Package For Geneset Enrichment Workflows
|
2024-12-14 |
|
bioconductor-process
|
public |
Ciphergen SELDI-TOF Processing
|
2024-12-14 |
|
bioconductor-harman
|
public |
The removal of batch effects from datasets using a PCA and constrained optimisation based technique
|
2024-12-14 |
|
perl-json-create
|
public |
fast, minimal, UTF-8-only serialization of data to JSON
|
2024-12-14 |
|
ginpiper
|
public |
Package for smooth curve estimation, R_e computation and plotting.
|
2024-12-14 |
|
perl-extutils-cppguess
|
public |
guess C++ compiler and flags
|
2024-12-14 |
|
bioconductor-fmrs
|
public |
Variable Selection in Finite Mixture of AFT Regression and FMR Models
|
2024-12-14 |
|
bioconductor-dcats
|
public |
Differential Composition Analysis Transformed by a Similarity matrix
|
2024-12-14 |
|
infernal
|
public |
Infernal is for searching DNA sequence databases for RNA structure and sequence similarities.
|
2024-12-14 |
|
r-facets
|
public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
|
2024-12-14 |
|
bioconductor-rnadecay
|
public |
Maximum Likelihood Decay Modeling of RNA Degradation Data
|
2024-12-14 |
|
fermi2
|
public |
Fermi2 focuses on the exploration of FMD-index as a graph.
|
2024-12-14 |
|
ucsc-websync
|
public |
download from https server, using files.txt on their end to get the list of files
|
2024-12-14 |
|
bioconductor-koinar
|
public |
KoinaR - Remote machine learning inference using Koina
|
2024-12-14 |
|
bioconductor-ggpa
|
public |
graph-GPA: A graphical model for prioritizing GWAS results and investigating pleiotropic architecture
|
2024-12-14 |
|
bioconductor-xina
|
public |
Multiplexes Isobaric Mass Tagged-based Kinetics Data for Network Analysis
|
2024-12-14 |
|
perl-devel-size
|
public |
Perl extension for finding the memory usage of Perl variables
|
2024-12-14 |
|
bioconductor-tomoseqr
|
public |
R Package for Analyzing Tomo-seq Data
|
2024-12-14 |
|
bioconductor-spacemarkers
|
public |
Spatial Interaction Markers
|
2024-12-14 |
|
bioconductor-unifiedwmwqpcr
|
public |
Unified Wilcoxon-Mann Whitney Test for testing differential expression in qPCR data
|
2024-12-14 |
|
bioconductor-ggkegg
|
public |
Analyzing and visualizing KEGG information using the grammar of graphics
|
2024-12-14 |
|
bioconductor-opweight
|
public |
Optimal p-value weighting with independent information
|
2024-12-14 |
|
bioconductor-biocbook
|
public |
Write, containerize, publish and version Quarto books with Bioconductor
|
2024-12-14 |
|
bioconductor-mina
|
public |
Microbial community dIversity and Network Analysis
|
2024-12-14 |
|
ucsc-chopfalines
|
public |
Read in FA file with long lines and rewrite it with shorter lines
|
2024-12-14 |
|
bioconductor-swfdr
|
public |
Estimation of the science-wise false discovery rate and the false discovery rate conditional on covariates
|
2024-12-14 |
|
bioconductor-parglms
|
public |
support for parallelized estimation of GLMs/GEEs
|
2024-12-14 |
|
bioconductor-macsquantifyr
|
public |
Fast treatment of MACSQuantify FACS data
|
2024-12-14 |
|
bioconductor-onlinefdr
|
public |
Online error rate control
|
2024-12-14 |
|
bioconductor-parody
|
public |
Parametric And Resistant Outlier DYtection
|
2024-12-14 |
|
bioconductor-rgsea
|
public |
Random Gene Set Enrichment Analysis
|
2024-12-14 |
|
bioconductor-rseqan
|
public |
R SeqAn
|
2024-12-14 |
|
bioconductor-rrho
|
public |
Inference on agreement between ordered lists
|
2024-12-14 |
|
pepnovo
|
public |
No Summary
|
2024-12-14 |
|
bioconductor-mvcclass
|
public |
Model-View-Controller (MVC) Classes
|
2024-12-14 |
