bioconda / packages / bioconductor-intramirexplorer 1.10.0

Predicting Targets for Drosophila Intragenic miRNAs

Installers

Info: This package contains files in non-standard labels.

conda install

  • noarch  v1.10.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-intramirexplorer
conda install -c bioconda/label/gcc7 bioconductor-intramirexplorer

Description

Intra-miR-ExploreR, an integrative miRNA target prediction bioinformatics tool, identifies targets combining expression and biophysical interactions of a given microRNA (miR). Using the tool, we have identified targets for 92 intragenic miRs in D. melanogaster, using available microarray expression data, from Affymetrix 1 and Affymetrix2 microarray array platforms, providing a global perspective of intragenic miR targets in Drosophila. Predicted targets are grouped according to biological functions using the DAVID Gene Ontology tool and are ranked based on a biologically relevant scoring system, enabling the user to identify functionally relevant targets for a given miR.

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