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pyopal
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public |
Cython bindings and Python interface to Opal, a SIMD-accelerated pairwise aligner.
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2024-12-14 |
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nextpolish
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public |
Fast and accurately polish the genome generated by long reads
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2024-12-14 |
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bioconductor-ctsge
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public |
Clustering of Time Series Gene Expression data
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2024-12-14 |
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andi
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public |
Efficient Estimation of Evolutionary Distances
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2024-12-14 |
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bitmapperbs
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public |
BitMapperBS: a fast and accurate read aligner for whole-genome bisulfite sequencing
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2024-12-14 |
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bioconductor-absseq
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public |
ABSSeq: a new RNA-Seq analysis method based on modelling absolute expression differences
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2024-12-14 |
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genericrepeatfinder
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public |
Generic Repeat Finder (GRF).
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2024-12-14 |
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r-scbio
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public |
Cellular population mapping (CPM) a deconvolution algorithm in which single-cell genomics is required in only one or a few samples, where in other samples of the same tissue, only bulk genomics is measured and the underlying fine resolution cellular heterogeneity is inferred.
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2024-12-14 |
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skder
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public |
skDER & CiDDER: efficient & high-resolution dereplication methods for microbial genomes
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2024-12-14 |
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bioconductor-oppti
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public |
Outlier Protein and Phosphosite Target Identifier
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2024-12-14 |
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bioconductor-qubic
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public |
An R package for qualitative biclustering in support of gene co-expression analyses
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2024-12-14 |
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r-pscbs
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public |
Segmentation of allele-specific DNA copy number data and detection of regions with abnormal copy number within each parental chromosome. Both tumor-normal paired and tumor-only analyses are supported.
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2024-12-14 |
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r-metama
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public |
Combines either p-values or modified effect sizes from different studies to find differentially expressed genes
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2024-12-14 |
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bioconductor-minet
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public |
Mutual Information NETworks
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2024-12-14 |
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cycle_finder
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public |
A de novo analysis tool for tandem and interspersed repeats based on cycle-finding
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2024-12-14 |
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bioconductor-deqms
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public |
a tool to perform statistical analysis of differential protein expression for quantitative proteomics data.
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2024-12-14 |
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greenhill
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public |
A de novo chromosomal-level scaffolding and phasing tool using Hi-C
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2024-12-14 |
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provean
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public |
PROVEAN (Protein Variation Effect Analyzer) is a software tool which predicts whether an amino acid substitution or indel has an impact on the biological function of a protein.
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2024-12-14 |
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bioconductor-marray
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public |
Exploratory analysis for two-color spotted microarray data
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2024-12-14 |
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fec
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public |
An error correction tool
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2024-12-14 |
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r-mkmisc
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public |
Contains several functions for statistical data analysis; e.g. for sample size and power calculations, computation of confidence intervals and tests, and generation of similarity matrices.
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2024-12-14 |
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consent
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public |
Scalable long read self-correction and assembly polishing with multiple sequence alignment
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2024-12-14 |
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bioconductor-alphamissenser
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public |
Accessing AlphaMissense Data Resources in R
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2024-12-14 |
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bioconductor-ichip
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public |
Bayesian Modeling of ChIP-chip Data Through Hidden Ising Models
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2024-12-14 |
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bioconductor-methylmix
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public |
MethylMix: Identifying methylation driven cancer genes
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2024-12-14 |
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bioconductor-limmagui
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public |
GUI for limma Package With Two Color Microarrays
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2024-12-14 |
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bioconductor-rprotobuflib
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public |
C++ headers and static libraries of Protocol buffers
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2024-12-14 |
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bioconductor-stattarget
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public |
Statistical Analysis of Molecular Profiles
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2024-12-14 |
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bioconductor-multiclust
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public |
multiClust: An R-package for Identifying Biologically Relevant Clusters in Cancer Transcriptome Profiles
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2024-12-14 |
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bioconductor-icobra
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public |
Comparison and Visualization of Ranking and Assignment Methods
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2024-12-14 |
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snostrip
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public |
Automatic snoRNA annotation pipeline
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2024-12-14 |
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r-speaq
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public |
Makes Nuclear Magnetic Resonance spectroscopy (NMR spectroscopy) data analysis as easy as possible by only requiring a small set of functions to perform an entire analysis. 'speaq' offers the possibility of raw spectra alignment and quantitation but also an analysis based on features whereby the spectra are converted to peaks which are then grouped and turned into features. These features can be processed with any number of statistical tools either included in 'speaq' or available elsewhere on CRAN. More detail can be found in Vu et al. (2011) <doi:10.1186/1471-2105-12-405> and Beirnaert et al. (2018) <doi:10.1371/journal.pcbi.1006018>.
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2024-12-14 |
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pybedgraph
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public |
A package for fast operations on 1-dimensional genomic signal tracks
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2024-12-14 |
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r-swamp
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public |
Collection of functions to connect the structure of the data with the information on the samples. Three types of associations are covered: 1. linear model of principal components. 2. hierarchical clustering analysis. 3. distribution of features-sample annotation associations. Additionally, the inter-relation between sample annotations can be analyzed. Simple methods are provided for the correction of batch effects and removal of principal components.
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2024-12-14 |
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bioconductor-gwas.bayes
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public |
Bayesian analysis of Gaussian GWAS data
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2024-12-14 |
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bioconductor-levi
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public |
Landscape Expression Visualization Interface
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2024-12-14 |
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bioconductor-hubpub
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public |
Utilities to create and use Bioconductor Hubs
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2024-12-14 |
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r-ic10
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public |
Implementation of the classifier described in the paper 'Genome-driven integrated classification of breast cancer validated in over 7,500 samples' (Ali HR et al., Genome Biology 2014). It uses copy number and/or expression form breast cancer data, trains a pamr classifier (Tibshirani et al.) with the features available and predicts the iC10 group.
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2024-12-14 |
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bioconductor-wrench
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public |
Wrench normalization for sparse count data
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2024-12-14 |
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mantis_pfa
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public |
Consensus-driven protein function annotation tool
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2024-12-14 |
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bioconductor-tkwidgets
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public |
R based tk widgets
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2024-12-14 |
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bioconductor-isocorrectorgui
|
public |
Graphical User Interface for IsoCorrectoR
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2024-12-14 |
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r-cobrar
|
public |
COnstraint-based Reconstruction and Analysis (COBRA) of metabolic networks in R
|
2024-12-14 |
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bioconductor-samspectral
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public |
Identifies cell population in flow cytometry data
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2024-12-14 |
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hla-la
|
public |
HLA typing from short and long reads
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2024-12-14 |
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cpat
|
public |
Coding Potential Assessment Tool
|
2024-12-14 |
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bioconductor-beaddatapackr
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public |
Compression of Illumina BeadArray data
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2024-12-14 |
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fegenie
|
public |
HMM-based identification and categorization of iron genes and iron gene operons in genomes and metagenomes.
|
2024-12-14 |
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d4tools
|
public |
The D4 command line utility program
|
2024-12-14 |
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metaphyler
|
public |
No Summary
|
2024-12-14 |
