| Package Name | Access | Summary | Updated |
|---|---|---|---|
| varpubs | public | Tool for finding PubMed evidence on genetic variants and generating LLM-based summaries | 2025-09-10 |
| dpcstruct | public | Unsupervised clustering algorithm for identifying and classifying protein domains based on structural similarity. | 2025-09-10 |
| tagra | public | TaGra: TAbular data preprocessing to GRAph representation. | 2025-09-10 |
| cdst | public | CoDing Sequence Typer (CDST): MD5 hash-based genome typing and clustering. | 2025-09-10 |
| alloshp | public | From mapped reads to Single Homeologous Polymorphisms (SHPs): pipeline for phylogenetic studies of allopolyploids | 2025-09-10 |
| lexicmap | public | efficient sequence alignment against millions of prokaryotic genomes | 2025-09-10 |
| neat | public | Toolset for generating synthethic FASTQ, VCF and BAM files. | 2025-09-10 |
| mity | public | Mity is a bioinformatic analysis pipeline designed to call mitochondrial SNV and INDEL variants from Whole Genome Sequencing (WGS) data. | 2025-09-10 |
| porechop_abi | public | Adapter inferrence and removal of Oxford Nanopore reads. | 2025-09-10 |
| marti | public | Metagenomic Analysis in Real Time | 2025-09-10 |
| gaftools | public | gaftools is a fast and comprehensive toolkit designed for processing pangenome alignments in GAF format | 2025-09-10 |
| gsmap | public | gsMap (genetically informed spatial mapping of cells for complex traits). | 2025-09-10 |
| metabolabpy | public | Python package to process 1D and 2D NMR spectroscopic data for metabolomics and tracer-based metabolism analysis. | 2025-09-10 |
| pegas | public | PeGAS is a Snakemake pipeline for genome analysis | 2025-09-10 |
| nanomotif | public | Identifying methlyation motifs in nanopore data | 2025-09-10 |
| perl-mce | public | Many-Core Engine for Perl providing parallel processing capabilities | 2025-09-10 |
| perl-image-exiftool | public | ExifTool is a platform-independent Perl library plus a command-line application for reading, writing and editing meta information in a wide variety of files. | 2025-09-10 |
| sierra-local | public | sierra-local is a Python3 implementation of the Stanford HIVdb Sierra service for generating drug resistance predictions from HIV-1 sequences. | 2025-09-10 |
| phyling | public | A phylogenetic inference tool based on protein-coding genomic sequences | 2025-09-10 |
| 3seq | public | 3SEQ tests all sequence triplets in an alignment for a mosaic recombination signal. | 2025-09-10 |
| addrg | public | No Summary | 2025-09-10 |
| rascaf | public | Scaffolding with RNA-seq read alignment. | 2025-09-10 |
| pathoscope | public | Species identification and strain attribution with unassembled sequencing data | 2025-09-10 |
| splicemap | public | Detects splice junctions from RNA-seq data. This method does not depend on any existing annotation of gene structures and is capable of finding novel splice junctions with high sensitivity and specificity. It can handle long reads (50–100 nt) and can exploit paired-read information to improve mapping accuracy. | 2025-09-10 |
| hardklor | public | Analyze mass spectra | 2025-09-10 |
