| Package Name | Access | Summary | Updated |
|---|---|---|---|
| hardklor | public | Analyze mass spectra | 2025-09-10 |
| longphase | public | LongPhase is an ultra-fast program for simultaneously co-phasing SNPs, small indels, large SVs, and (5mC) modifications for Nanopore and PacBio platforms. | 2025-09-10 |
| gxformat2 | public | Galaxy Workflow Format 2 Descriptions. | 2025-09-10 |
| fastdup | public | A Scalable Duplicate Marking Tool using Speculation-and-Test Mechanism. | 2025-09-10 |
| antismash | public | antiSMASH - the antibiotics and Secondary Metabolite Analysis SHell. | 2025-09-09 |
| snakemake-interface-scheduler-plugins | public | This package provides a stable interface for interactions between Snakemake and its scheduler plugins. | 2025-09-09 |
| biscuit | public | A utility for analyzing sodium bisulfite conversion-based DNA methylation/modification data. | 2025-09-09 |
| gempipe | public | gempipe is a tool for the reconstruction of strain-specific genome-scale metabolic models. | 2025-09-09 |
| trimadap | public | Fast but inaccurate adapter trimmer for Illumina reads. | 2025-09-09 |
| fermikit | public | No Summary | 2025-09-09 |
| fermi2 | public | Fermi2 focuses on the exploration of FMD-index as a graph. | 2025-09-09 |
| htsbox | public | HTSbox is a fork of early HTSlib. It is a collection of small experimental tools manipulating HTS-related files. | 2025-09-09 |
| longdust | public | Longdust identifies long highly repetitive STRs, VNTRs, satellite DNA and other low-complexity regions (LCRs) in a genome. | 2025-09-09 |
| pangene | public | Pangene is a command-line tool to construct a pangenome gene graph. | 2025-09-09 |
| ultra | public | ULTRA is a tool for finding and annotating tandem repeats within genomic sequence. | 2025-09-09 |
| tiddit | public | TIDDIT - structural variant calling. | 2025-09-09 |
| bbknn | public | Batch balanced KNN | 2025-09-09 |
| bamread | public | Read bam files quickly into dataframes in Python | 2025-09-09 |
| bfc | public | BFC is a standalone high-performance tool for correcting sequencing errors from Illumina sequencing data. | 2025-09-09 |
| velvet | public | Sequence Assembler for short reads | 2025-09-09 |
| callerpp | public | A simple consensus caller based on partial order alignment with spoa | 2025-09-09 |
| cutesv | public | cuteSV is a long-read based human genomic structural variation detection tool. | 2025-09-09 |
| fusioncatcher | public | Finder of Somatic Fusion Genes in RNA-seq data. | 2025-09-09 |
| cats-rf | public | Reference-free transcriptome assembly quality assessment tool. | 2025-09-09 |
| nextclade | public | Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement. | 2025-09-09 |
