|
bioconductor-clustall
|
public |
ClustAll: Data driven strategy to robustly identify stratification of patients within complex diseases
|
2025-03-25 |
|
amplicontyper
|
public |
Tool for training model and classifying reads from environmental ONT amplicon sequencing.
|
2025-03-25 |
|
bioconductor-tidyflowcore
|
public |
tidyFlowCore: Bringing flowCore to the tidyverse
|
2025-03-25 |
|
bioconductor-tidytof
|
public |
Analyze High-dimensional Cytometry Data Using Tidy Data Principles
|
2025-03-25 |
|
allhic
|
public |
Genome scaffolding based on HiC data in heterozygous and high ploidy genomes
|
2025-03-25 |
|
svseq2
|
public |
An improved approach for accurate and efficient calling of structural variations with low-coverage sequence data
|
2025-03-25 |
|
bioconductor-dfplyr
|
public |
A `DataFrame` (`S4Vectors`) backend for `dplyr`
|
2025-03-25 |
|
bioconductor-ucsc.utils
|
public |
Low-level utilities to retrieve data from the UCSC Genome Browser
|
2025-03-25 |
|
bioconductor-bugphyzz
|
public |
A harmonized data resource and software for enrichment analysis of microbial physiologies
|
2025-03-25 |
|
bioconductor-pedixplorer
|
public |
Pedigree Functions
|
2025-03-25 |
|
chain2paf
|
public |
convert CHAIN format to PAF format
|
2025-03-25 |
|
echidna
|
public |
Mapping genotype to phenotype through joint probabilistic modeling of single-cell gene expression and chromosomal copy number variation.
|
2025-03-25 |
|
mcscanx
|
public |
Multiple Collinearity Scan toolkit X version
|
2025-03-25 |
|
bioconductor-ath1121501frmavecs
|
public |
Vectors used by frma for microarrays of type ath1121501
|
2025-03-25 |
|
smcpp
|
public |
SMC++ infers population history from whole-genome sequence data.
|
2025-03-25 |
|
seshat
|
public |
Tools for programmatically annotating VCFs with the Seshat TP53 database.
|
2025-03-25 |
|
paf2chain
|
public |
convert PAF format to CHAIN format
|
2025-03-25 |
|
softsv
|
public |
SoftSV is a tool for the detection of small and large deletions, inversions, tandem duplications and translocations from paired-end sequencing data.
|
2025-03-25 |
|
bioconductor-anvilaz
|
public |
R / Bioconductor Support for the AnVIL Azure Platform
|
2025-03-25 |
|
bioconductor-anvilgcp
|
public |
The GCP R Client for the AnVIL
|
2025-03-25 |
|
bioconductor-scmitomut
|
public |
Single-cell Mitochondrial Mutation Analysis Tool
|
2025-03-25 |
|
bioconductor-alphamissenser
|
public |
Accessing AlphaMissense Data Resources in R
|
2025-03-25 |
|
bioconductor-koinar
|
public |
KoinaR - Remote machine learning inference using Koina
|
2025-03-25 |
|
bioconductor-spacemarkers
|
public |
Spatial Interaction Markers
|
2025-03-25 |
|
bioconductor-tidysbml
|
public |
Extract SBML's data into dataframes
|
2025-03-25 |
|
bioconductor-hubmapr
|
public |
Interface to 'HuBMAP'
|
2025-03-25 |
|
bioconductor-seahtrue
|
public |
Seahtrue revives XF data for structured data analysis
|
2025-03-25 |
|
bioconductor-biocroxytest
|
public |
Handle Long Tests in Bioconductor Packages
|
2025-03-25 |
|
bioconductor-anvilbase
|
public |
Generic functions for interacting with the AnVIL ecosystem
|
2025-03-25 |
|
bioconductor-gypsum
|
public |
Interface to the gypsum REST API
|
2025-03-25 |
|
bioconductor-assorthead
|
public |
Assorted Header-Only C++ Libraries
|
2025-03-25 |
|
bioconductor-shiny.gosling
|
public |
A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization for R and Shiny
|
2025-03-25 |
|
popins2
|
public |
Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs
|
2025-03-25 |
|
bindashtree
|
public |
bindashtree is a ultra-fast tool to build genome phylogenetic tree via Binwise Densified MinHash and Rapid Neighbor-joining
|
2025-03-25 |
|
gpatch
|
public |
Starting with alignments of contigs to a reference genome, produce a chromosome-scale pseudoassembly by patching gaps between mapped contigs with sequences from the reference."
|
2025-03-25 |
|
pseqsid
|
public |
Calculates pairwise sequence identity, similarity and normalized similarity
score of proteins in a multiple sequence alignment.
|
2025-03-25 |
|
virdig
|
public |
A de novo transcriptome assembler for coronavirus.
|
2025-03-25 |
|
equirep
|
public |
EquiRep is tool to identify tandem repeats.
|
2025-03-25 |
|
ibridges
|
public |
Package for accessing data and metadata on iRods servers.
|
2025-03-25 |
|
sylph-tax
|
public |
Integrating taxonomic information into the sylph metagenome profiler.
|
2025-03-25 |
|
mmft
|
public |
Max's minimal fasta toolkit
|
2025-03-25 |
|
optilcms
|
public |
Pipeline for processing LC-MS raw data with optimized parameters.
|
2025-03-25 |
|
mm2plus
|
public |
Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
|
2025-03-25 |
|
phytop
|
public |
Phytop: A tool for visualizing and recognizing signals of incomplete lineage sorting and hybridization using species trees output from ASTRAL
|
2025-03-25 |
|
pyskani
|
public |
PyO3 bindings and Python interface to skani, a method for fast fast genomic identity calculation using sparse chaining.
|
2025-03-25 |
|
predictosaurus
|
public |
Predictosaurus is a command-line tool designed for uncertainty-aware haplotype-based genomic variant effect prediction.
|
2025-03-25 |
|
flexsweep
|
public |
A versatile tool for detecting selective sweeps
|
2025-03-25 |
|
parnas
|
public |
Representative taxon sampling from phylogenetic trees
|
2025-03-25 |
|
drug2cell
|
public |
This is a collection of utility functions for gene group activity evaluation in scanpy
|
2025-03-25 |
|
mirscore
|
public |
miRScore: A rapid and precise microRNA validation tool
|
2025-03-25 |
