comparem2
Rapid microbial genomes-to-report pipeline
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Description
CompareM2 runs fourteen analysis tools over a set of microbial assemblies and renders one self-contained HTML report: assembly statistics, completeness, taxonomy, annotation, AMR genes, sequence types, ANI, a pangenome, phylogenies and draft metabolic models.
About
Summary
Rapid microbial genomes-to-report pipeline
Last Updated
Oct 12, 2026 at 19:49
License
GPL-3.0-or-later
Supported Platforms
noarch
GitHub Repository
https://github.com/cmkobel/CompareM2Documentation
https://comparem2.readthedocs.io