| Package Name | Access | Summary | Updated |
|---|---|---|---|
| ucsc-hgloadbed | public | Load a generic bed file into database. | 2025-07-15 |
| ucsc-hgspeciesrna | public | Create fasta file with RNA from one species. | 2025-07-15 |
| bindash | public | Fast and precise comparison of genomes and metagenomes (in the order of terabytes) on a typical personal laptop. | 2025-07-14 |
| htslib | public | C library for high-throughput sequencing data formats. | 2025-07-14 |
| ucsc-paranodestatus | public | Check status of paraNode on a list of machines. | 2025-07-14 |
| ucsc-parahubstop | public | Shut down paraHub daemon. | 2025-07-14 |
| ucsc-paranode | public | Parasol node server. | 2025-07-14 |
| ucsc-paranodestop | public | Shut down parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-paranodestart | public | Start up parasol node daemons on a list of machines. | 2025-07-14 |
| ucsc-parasol | public | Parallel job management system for a compute cluster. | 2025-07-14 |
| csubst | public | Tool for analyzing combinatorial codon substitutions in DNA sequences. | 2025-07-14 |
| socru | public | Order and orientation of complete bacterial genomes | 2025-07-14 |
| genoboo | public | A collaborative notebook for comparative genomics (active fork of GeneNoteBook) | 2025-07-14 |
| r-floral | public | Log-ratio Lasso regression for continuous, binary, and survival outcomes with (longitudinal) compositional features. See Fei and others (2024) <doi:10.1016/j.crmeth.2024.100899>. | 2025-07-14 |
| gencube | public | GenCube enables researchers to search for, download, retrieve metadata, and unify genome assemblies and diverse types of annotations for sequencing-based experimental data. | 2025-07-14 |
| kcounter | public | A simple package for counting DNA k-mers in Python. Written in Rust. | 2025-07-14 |
| pyngost | public | pyngoST: fast, simultaneous and accurate and multiple sequence typing of Neisseria gonorrhoeae genome collections | 2025-07-14 |
| pangwas | public | A pipeline for pangenome wide association studies (panGWAS). | 2025-07-14 |
| marker-magu | public | Marker-MAGu: Trans-Kingdom Marker Gene Pipeline for Taxonomic Profiling of Human Metagenomes | 2025-07-14 |
| vpt-cellpose2 | public | Meta-package for VPT with Cellpose 2 plugin | 2025-07-14 |
| chamois | public | Chemical Hierarchy Approximation for secondary Metabolism clusters Obtained In Silico. | 2025-07-14 |
| addeam | public | A Fast and Scalable Tool for Estimating and Clustering Reference-Level Damage Profiles. | 2025-07-14 |
| libpdb-redo | public | Library containing shared code for various PDB-REDO programs. | 2025-07-14 |
| showali | public | Minimalistic TUI viewer for aligned biological sequences (FASTA, ALN, MAF, PHYLIP) | 2025-07-14 |
| parm | public | promoter activity regulatory model | 2025-07-14 |
