CMD + K

bioconductor-crisprscore

Community

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-crisprscore

Usage Tracking

1.10.0
1.6.0
1.4.0
1.2.0
4 / 8 versions selected
Downloads (Last 6 months): 0

Description

Provides R wrappers of several on-target and off-target scoring methods for CRISPR guide RNAs (gRNAs). The following nucleases are supported: SpCas9, AsCas12a, enAsCas12a, and RfxCas13d (CasRx). The available on-target cutting efficiency scoring methods are RuleSet1, Azimuth, DeepHF, DeepCpf1, enPAM+GB, and CRISPRscan. Both the CFD and MIT scoring methods are available for off-target specificity prediction. The package also provides a Lindel-derived score to predict the probability of a gRNA to produce indels inducing a frameshift for the Cas9 nuclease. Note that DeepHF, DeepCpf1 and enPAM+GB are not available on Windows machines.

About

Summary

On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

Last Updated

Dec 23, 2024 at 02:38

License

MIT + file LICENSE

Total Downloads

5.1K

Supported Platforms

noarch