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bioconductor-orthos

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`orthos` is an R package for variance decomposition using conditional variational auto-encoders

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-orthos

Usage Tracking

1.4.0
1.0.1
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

orthos decomposes RNA-seq contrasts, for example obtained from a gene knock-out or compound treatment experiment, into unspecific and experiment-specific components. Original and decomposed contrasts can be efficiently queried against a large database of contrasts (derived from ARCHS4, https://maayanlab.cloud/archs4/) to identify similar experiments. orthos furthermore provides plotting functions to visualize the results of such a search for similar contrasts.

About

Summary

`orthos` is an R package for variance decomposition using conditional variational auto-encoders

Last Updated

Dec 23, 2024 at 02:32

License

MIT + file LICENSE

Total Downloads

1.5K

Supported Platforms

noarch