bioconductor-orthos
`orthos` is an R package for variance decomposition using conditional variational auto-encoders
`orthos` is an R package for variance decomposition using conditional variational auto-encoders
To install this package, run one of the following:
orthos decomposes RNA-seq contrasts, for example obtained from a gene knock-out or compound treatment experiment, into unspecific and experiment-specific components. Original and decomposed contrasts can be efficiently queried against a large database of contrasts (derived from ARCHS4, https://maayanlab.cloud/archs4/) to identify similar experiments. orthos furthermore provides plotting functions to visualize the results of such a search for similar contrasts.
Summary
`orthos` is an R package for variance decomposition using conditional variational auto-encoders
Last Updated
Dec 23, 2024 at 02:32
License
MIT + file LICENSE
Total Downloads
1.5K
Supported Platforms