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bioconductor-hiannotator
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public |
Functions for annotating GRanges objects
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2024-12-29 |
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bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0
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public |
T2T-CHM13v2.0 assembly (Homo sapiens) wrapped in a BSgenome object
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2024-12-29 |
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bioconductor-bsgenome.mmusculus.ucsc.mm8
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public |
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.rnorvegicus.ucsc.rn4
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public |
Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major
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public |
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected major alleles (dbSNP151)
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2024-12-29 |
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bioconductor-bsgenome.hsapiens.ucsc.hg17
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public |
Full genome sequences for Homo sapiens (UCSC version hg17)
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2024-12-29 |
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bioconductor-trnascanimport
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public |
Importing a tRNAscan-SE result file as GRanges object
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2024-12-29 |
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bioconductor-bsgenome.athaliana.tair.04232008
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public |
Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.mmulatta.ucsc.rhemac3
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public |
Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm2
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm6
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm6, Aug. 2014) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro2
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public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-rtrmui
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public |
A shiny user interface for rTRM
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2024-12-29 |
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bioconductor-txdb.athaliana.biomart.plantsmart28
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public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
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2024-12-29 |
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bioconductor-txdb.drerio.ucsc.danrer11.refgene
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public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
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2024-12-29 |
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bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene
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public |
Annotation package for TxDb object(s)
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2024-12-29 |
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bioconductor-sctreeviz
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public |
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations
|
2024-12-29 |
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bioconductor-doubletrouble
|
public |
Identification and classification of duplicated genes
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2024-12-29 |
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bioconductor-epivizrstandalone
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public |
Run Epiviz Interactive Genomic Data Visualization App within R
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2024-12-29 |
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bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene
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public |
Annotation package for TxDb object(s)
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2024-12-29 |
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bioconductor-epivizr
|
public |
R Interface to epiviz web app
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2024-12-29 |
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bioconductor-txdb.mmulatta.ucsc.rhemac10.refgene
|
public |
Annotation package for TxDb object(s)
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2024-12-29 |
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bioconductor-txdb.rnorvegicus.ucsc.rn4.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-29 |
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bioconductor-genomicinteractionnodes
|
public |
A R/Bioconductor package to detect the interaction nodes from HiC/HiChIP/HiCAR data
|
2024-12-29 |
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bioconductor-mus.musculus
|
public |
Contains the Mus.musculus object to access data from several related annotation packages.
|
2024-12-29 |
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bioconductor-rhisat2
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public |
R Wrapper for HISAT2 Aligner
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2024-12-29 |
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isescan
|
public |
A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome
|
2024-12-28 |
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bioconductor-txdb.mmusculus.ucsc.mm10.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-txdb.ggallus.ucsc.galgal6.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-fdb.fantom4.promoters.hg19
|
public |
FANTOM4 promoters, liftOver'ed from hg18 to hg19, CpGs quantified
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2024-12-28 |
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bioconductor-txdb.hsapiens.ucsc.hg38.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.cfamiliaris.ucsc.canfam4.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.rnorvegicus.ucsc.rn6.ncbirefseq
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-qpgraph
|
public |
Estimation of genetic and molecular regulatory networks from high-throughput genomics data
|
2024-12-28 |
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r-txrevise
|
public |
Construct custom transcript annotations for Salmon and kallisto
|
2024-12-28 |
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bioconductor-edaseq
|
public |
Exploratory Data Analysis and Normalization for RNA-Seq
|
2024-12-28 |
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bioconductor-txdb.ptroglodytes.ucsc.pantro6.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.athaliana.biomart.plantsmart22
|
public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-bumphunter
|
public |
Bump Hunter
|
2024-12-28 |
|
bioconductor-txdb.btaurus.ucsc.bostau9.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
|
bioconductor-txdb.athaliana.biomart.plantsmart51
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.mmulatta.ucsc.rhemac8.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-sgseq
|
public |
Splice event prediction and quantification from RNA-seq data
|
2024-12-28 |
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bioconductor-cssq
|
public |
Chip-seq Signal Quantifier Pipeline
|
2024-12-28 |
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bioconductor-txdb.hsapiens.ucsc.hg19.lincrnastranscripts
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
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bioconductor-txdb.rnorvegicus.ucsc.rn6.refgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-txdb.cfamiliaris.ucsc.canfam5.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-28 |
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bioconductor-txdb.celegans.ucsc.ce6.ensgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-28 |
|
bioconductor-fdb.ucsc.trnas
|
public |
Exposes an annotation databases generated from UCSC by exposing these as FeatureDb objects
|
2024-12-28 |
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crux-toolkit
|
public |
A cross-platform suite of analysis tools for interpreting protein mass spectrometry data
|
2024-12-28 |
