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bioconductor-pcagopromoter.mm.mm9
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public |
pcaGoPromoter.Mm.mm9 is a data package used by pcaGoPromoter
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2023-06-16 |
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bioconductor-flowfit
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public |
Estimate proliferation in cell-tracking dye studies
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2023-06-16 |
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bioconductor-rtandem
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public |
Interfaces the tandem protein identification algorithm in R
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2023-06-16 |
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bioconductor-geecc
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public |
Gene Set Enrichment Analysis Extended to Contingency Cubes
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2023-06-16 |
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bioconductor-clonotyper
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public |
High throughput analysis of T cell antigen receptor sequences
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2023-06-16 |
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bioconductor-coexnet
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public |
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
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2023-06-16 |
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r-clvalid
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public |
Statistical and biological validation of clustering results.
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2023-06-16 |
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fast5-research
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public |
ONT Research fast5 read/write package
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2023-06-16 |
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bioconductor-iontreedata
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public |
Raw MS2, MS3 scans from direct infusion mass spectrometry (DIMS) and a demo ion tree database 'mzDB' derived from the DIMS data are included. The demo database is used to show the functionalities provided by the 'iontree' package, not for the purpose of compound identification by any means.
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2023-06-16 |
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bioconductor-gprege
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public |
Gaussian Process Ranking and Estimation of Gene Expression time-series
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2023-06-16 |
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bioconductor-condcomp
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public |
For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.
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2023-06-16 |
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changeo
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public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. Citations: Gupta, et al (2015) <doi:10.1093/bioinformatics/btv359>.
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2023-06-16 |
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bioconductor-gskb
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public |
Gene Set data for pathway analysis in mouse
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2023-06-16 |
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bioconductor-dupchecker
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public |
a package for checking high-throughput genomic data redundancy in meta-analysis
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2023-06-16 |
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bioconductor-cormut
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public |
Detect the correlated mutations based on selection pressure
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2023-06-16 |
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bioconductor-omicsmarker
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public |
Classification and Feature Selection for 'Omics' Datasets
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2023-06-16 |
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bioconductor-ngscopy
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public |
NGScopy provides a quantitative caller for detecting copy number variations in next generation sequencing (NGS), including whole genome sequencing (WGS), whole exome sequencing (WES) and targeted panel sequencing (TPS). The caller can be parallelized by chromosomes to use multiple processors/cores on one computer.
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2023-06-16 |
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bioconductor-gatingmldata
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public |
Data and XML files for Gating-ML Test suite
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2023-06-16 |
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bioconductor-abadata
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public |
Averaged gene expression in human brain regions from Allen Brain Atlas
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2023-06-16 |
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faststructure
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public |
A variational framework for inferring population structure from SNP genotype data.
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2023-06-16 |
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bioconductor-adaptest
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public |
Data-Adaptive Statistics for High-Dimensional Multiple Testing
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2023-06-16 |
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bioconductor-chrogps
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public |
chroGPS2: Generation, visualization and differential analysis of epigenome maps
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2023-06-16 |
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calour
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public |
exploratory and interactive microbiome analyses based on heatmaps
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2023-06-16 |
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bioconductor-wavetilingdata
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public |
waveTiling Example Data
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2023-06-16 |
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bioconductor-pathprintgeodata
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public |
Pathway fingerprint vectors representing a subsection of arrays from the GEO data repository
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2023-06-16 |
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bioconductor-jctseqdata
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public |
Example Junction Count data for use with JunctionSeq
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2023-06-16 |
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bioconductor-gqtlstats
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public |
gQTLstats: computationally efficient analysis for eQTL and allied studies
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2023-06-16 |
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perl-local-lib
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public |
create and use a local lib/ for perl modules with PERL5LIB
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2023-06-16 |
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bioconductor-pcagopromoter.rn.rn4
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public |
pcaGoPromoter.Rn.rn4 is a data package used by pcaGoPromoter
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2023-06-16 |
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r-enrichr
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public |
Provides an R interface to all 'Enrichr' databases, a web-based tool for analysing gene sets and returns any enrichment of common annotated biological functions. <http://amp.pharm.mssm.edu/Enrichr/>.
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2023-06-16 |
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bioconductor-elbow
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public |
ELBOW - Evaluating foLd change By the lOgit Way
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2023-06-16 |
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skmer
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public |
Assembly-free and alignment-free tool for estimating genomic distances between genome-skims
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2023-06-16 |
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bioconductor-pcagopromoter.hs.hg19
|
public |
pcaGoPromoter.Hs.hg19 is a data package used by pcaGoPromoter
|
2023-06-16 |
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bioconductor-msstatsbiodata
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public |
Datasets of published biological studies with DDA or SRM experiments
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2023-06-16 |
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r-bc3net
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public |
Implementation of the BC3NET algorithm for gene regulatory network inference (de Matos Simoes and Frank Emmert-Streib, Bagging Statistical Network Inference from Large-Scale Gene Expression Data, PLoS ONE 7(3): e33624, <doi:10.1371/journal.pone.0033624>).
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2023-06-16 |
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xpclr
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public |
Code to compute xp-clr values to detect selection as per Chen, Patterson & Reich 2010.
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2023-06-16 |
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bioconductor-perturbatr
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public |
Statistical Analysis of High-Throughput Genetic Perturbation Screens
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2023-06-16 |
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bioconductor-geneticsdesign
|
public |
Functions for designing genetics studies
|
2023-06-16 |
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bioconductor-facopy.annot
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public |
Annotation for the copy number alteration association and enrichment analyses with facopy
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2023-06-16 |
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mirtrace
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public |
miRTrace is a new quality control and taxonomic tracing tool developed specifically for small RNA sequencing data (sRNA-Seq).
Each sample is characterized by profiling sequencing quality, read length, sequencing depth and miRNA complexity and also the
amounts of miRNAs versus undesirable sequences (derived from tRNAs, rRNAs and sequencing artifacts). In addition to these routine
quality control (QC) analyses, miRTrace can accurately and sensitively resolve taxonomic origins of small RNA-Seq data based on the
composition of clade-specific miRNAs. This feature can be used to detect cross-clade contaminations in typical lab settings. It can
also be applied for more specific applications in forensics, food quality control and clinical diagnosis, for instance tracing the
origins of meat products or detecting parasitic microRNAs in host serum.
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2023-06-16 |
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bioconductor-pint
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public |
Pairwise INTegration of functional genomics data
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2023-06-16 |
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bioconductor-lol
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public |
Lots Of Lasso
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2023-06-16 |
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bioconductor-flowqbdata
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public |
The flowQBData package provides data files used as examples and for testing of the software provided in the flowQB package.
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2023-06-16 |
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bioconductor-caomicsv
|
public |
Visualization of multi-dimentional cancer genomics data
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2023-06-16 |
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bioconductor-affypara
|
public |
Parallelized preprocessing methods for Affymetrix Oligonucleotide Arrays
|
2023-06-16 |
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bioconductor-charmdata
|
public |
An example dataset for use with the charm package
|
2023-06-16 |
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bioconductor-charm
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public |
This package implements analysis tools for DNA methylation data generated using Nimblegen microarrays and the McrBC protocol. It finds differentially methylated regions between samples, calculates percentage methylation estimates and includes array quality assessment tools.
|
2023-06-16 |
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bioconductor-affyqcreport
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public |
QC Report Generation for affyBatch objects
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2023-06-16 |
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bioconductor-rnaseqr
|
public |
RNASeqR: an R package for automated two-group RNA-Seq analysis workflow
|
2023-06-16 |
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bioconductor-champ
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public |
Chip Analysis Methylation Pipeline for Illumina HumanMethylation450 and EPIC
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2023-06-16 |
