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bioconductor-bsgenome.carietinum.ncbi.v1
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public |
Full genome sequences for Cicer arietinum (Chickpea) as provided by NCBI (ASM33114v1, Jan. 2013) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau8
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau8, Jun. 2014) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau6.masked
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau6
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau6, Nov. 2009) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau4.masked
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau4, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau4
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau3.masked
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Btaurus.UCSC.bosTau3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.btaurus.ucsc.bostau3
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau3, Aug. 2006) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.athaliana.tair.tair9
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public |
Full genome sequences for Arabidopsis thaliana as provided by TAIR (TAIR9 Genome Release) and stored in Biostrings objects. Note that TAIR10 is an "annotation release" based on the same genome assembly as TAIR9.
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2025-04-22 |
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bioconductor-bsgenome.athaliana.tair.04232008
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public |
Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.aofficinalis.ncbi.v1
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public |
Full genome sequences for Asparagus officinalis (Garden asparagus) as provided by NCBI (Aspof.V1, Feb. 2017) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.amellifera.ucsc.apimel2.masked
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public |
Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Amellifera.UCSC.apiMel2, except that each of them has the 3 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), and (3) the mask of repeats from RepeatMasker (RM mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.amellifera.ucsc.apimel2
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public |
Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.amellifera.beebase.assembly4
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public |
iFull genome sequences for Apis mellifera (Honey Bee) as provided by BeeBase (assembly4, Feb. 2008) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.alyrata.jgi.v1
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public |
Arabidopsis lyrata full genome (JGI version V1.0)
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2025-04-22 |
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bioconductor-breakpointr
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public |
Find breakpoints in Strand-seq data
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2025-04-22 |
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bioconductor-fission
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public |
RangedSummarizedExperiment for time course RNA-Seq of fission yeast in response to stress, by Leong et al., Nat Commun 2014.
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2025-04-22 |
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bioconductor-fcbf
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public |
Fast Correlation Based Filter for Feature Selection
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2025-04-22 |
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bioconductor-expressionatlas
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public |
Download datasets from EMBL-EBI Expression Atlas
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2025-04-22 |
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bioconductor-dream4
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public |
Synthetic Expression Data for Gene Regulatory Network Inference from the 2009 DREAM4 challenge
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2025-04-22 |
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bioconductor-bumhmm
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public |
Computational pipeline for computing probability of modification from structure probing experiment data
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2025-04-22 |
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bioconductor-brgedata
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public |
Exposures, Gene Expression and Methylation data for ilustration purpouses
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2025-04-22 |
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bioconductor-stroma4
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public |
Assign Properties to TNBC Patients
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2025-04-22 |
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bioconductor-sigsquared
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public |
Gene signature generation for functionally validated signaling pathways
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2025-04-22 |
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bioconductor-seqc
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public |
RNA-seq data generated from SEQC (MAQC-III) study
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2025-04-22 |
