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bioconductor-bsgenome.ggallus.ucsc.galgal3
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public |
Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.gaculeatus.ucsc.gasacu1.masked
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public |
Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Gaculeatus.UCSC.gasAcu1, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.gaculeatus.ucsc.gasacu1
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public |
Full genome sequences for Gasterosteus aculeatus (Stickleback) as provided by UCSC (gasAcu1, Feb. 2006) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.drerio.ucsc.danrer7.masked
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer7, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.drerio.ucsc.danrer6.masked
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer6, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.drerio.ucsc.danrer6
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-methylmix
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public |
MethylMix: Identifying methylation driven cancer genes
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2025-04-22 |
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bioconductor-mdts
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public |
Detection of de novo deletion in targeted sequencing trios
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2025-04-22 |
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bioconductor-qdnaseq.hg19
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public |
QDNAseq bin annotation for hg19
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2025-04-22 |
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bioconductor-bsgenome.drerio.ucsc.danrer5.masked
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects. The sequences are the same as in BSgenome.Drerio.UCSC.danRer5, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.drerio.ucsc.danrer5
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer5, Jul. 2007) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.drerio.ucsc.danrer10
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer10, Sep. 2014) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-immunoclust
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public |
immunoClust - Automated Pipeline for Population Detection in Flow Cytometry
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2025-04-22 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm6
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm6, Aug. 2014) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm3.masked
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm3, Apr. 2006) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm2.masked
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects. The sequences are the same as in BSgenome.Dmelanogaster.UCSC.dm2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-predictionet
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public |
Inference for predictive networks designed for (but not limited to) genomic data
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2025-04-22 |
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bioconductor-bsgenome.dmelanogaster.ucsc.dm2
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public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.cfamiliaris.ucsc.canfam3.masked
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public |
Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam3, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-bsgenome.cfamiliaris.ucsc.canfam3
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public |
Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.cfamiliaris.ucsc.canfam2.masked
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public |
Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects. The sequences are the same as in BSgenome.Cfamiliaris.UCSC.canFam2, except that each of them has the 4 following masks on top: (1) the mask of assembly gaps (AGAPS mask), (2) the mask of intra-contig ambiguities (AMB mask), (3) the mask of repeats from RepeatMasker (RM mask), and (4) the mask of repeats from Tandem Repeats Finder (TRF mask). Only the AGAPS and AMB masks are "active" by default.
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2025-04-22 |
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bioconductor-countclust
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public |
Clustering and Visualizing RNA-Seq Expression Data using Grade of Membership Models
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2025-04-22 |
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bioconductor-bsgenome.cfamiliaris.ucsc.canfam2
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public |
Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam2, May 2005) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.celegans.ucsc.ce2
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public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce2, Mar. 2004) and stored in Biostrings objects.
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2025-04-22 |
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bioconductor-bsgenome.celegans.ucsc.ce11
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public |
Full genome sequences for Caenorhabditis elegans (Worm) as provided by UCSC (ce11, Feb. 2013) and stored in Biostrings objects.
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2025-04-22 |
