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bioconductor-metavizr
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public |
R Interface to the metaviz web app for interactive metagenomics data analysis and visualization
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2025-04-22 |
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cgat-daisy
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public |
A system to design and execute benchmarks
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2025-04-22 |
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codingquarry
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public |
CodingQuarry: highly accurate hidden Markov model gene prediction in fungal genomes using RNA-seq transcripts.
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2025-04-22 |
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comet-ms
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public |
Comet is a command line tool that does MS/MS database search.
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2025-04-22 |
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r-bedr
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public |
Genomic regions processing using open-source command line tools such as 'BEDTools', 'BEDOPS' and 'Tabix'. These tools offer scalable and efficient utilities to perform genome arithmetic e.g indexing, formatting and merging. bedr API enhances access to these tools as well as offers additional utilities for genomic regions processing.
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2025-04-22 |
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bcftools-gtc2vcf-plugin
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public |
Tools to convert Illumina and Affymetrix array intensity data files into VCF files.
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2025-04-22 |
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kipoiseq
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public |
kipoiseq: sequence-based data-laoders for Kipoi
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2025-04-22 |
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kipoi_veff
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public |
kipoi_veff: variant effect prediction plugin for Kipoi
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2025-04-22 |
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r-goeveg
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public |
A collection of functions useful in (vegetation) community analyses and ordinations, mainly to facilitate plotting and interpretation. Includes automatic species selection for ordination diagrams, species response curves and rank-abundance curves.
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2025-04-22 |
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bioconductor-scrnaseq
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public |
Collection of Public Single-Cell RNA-Seq Datasets
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2025-04-22 |
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bioconductor-isee
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public |
Interactive SummarizedExperiment Explorer
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2025-04-22 |
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r-facets
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public |
Cellular Fraction and Copy Numbers from Tumor Sequencing
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2025-04-22 |
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bioconductor-decipher
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public |
Tools for curating, analyzing, and manipulating biological sequences
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2025-04-22 |
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bioconductor-tissueenrich
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public |
Tissue-specific gene enrichment analysis
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2025-04-22 |
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bioconductor-chromvar
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public |
Chromatin Variation Across Regions
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2025-04-22 |
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plek
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public |
Predictor of long non-coding RNAs and mRNAs based on k-mer scheme.
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2025-04-22 |
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r-pctgcdata
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public |
Provides GC percentage of a 1 kilobase window at a genomic position for different builds of human and mouse genomes.
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2025-04-22 |
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r-nabor
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public |
An R wrapper for 'libnabo', an exact or approximate k nearest neighbour library which is optimised for low dimensional spaces (e.g. 3D)
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2025-04-22 |
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fgmp
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public |
FGMP: assessing fungal genome completeness and gene content.
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2025-04-22 |
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transit
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public |
TRANSIT
|
2025-04-22 |
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ska
|
public |
SKA (Split Kmer Analysis)
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2025-04-22 |
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gneiss
|
public |
Compositional data analysis tools and visualizations
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2025-04-22 |
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batvi
|
public |
Detect viral integrations
|
2025-04-22 |
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clust
|
public |
Optimised consensus clustering of multiple heterogeneous datasets.
|
2025-04-22 |
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bioconductor-enrichmentbrowser
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public |
Seamless navigation through combined results of set-based and network-based enrichment analysis
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2025-04-22 |
