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Package Name Access Summary Updated
bioconductor-biseq public Processing and analyzing bisulfite sequencing data 2024-12-27
bioconductor-padog public Pathway Analysis with Down-weighting of Overlapping Genes (PADOG) 2024-12-27
bioconductor-mapredictdsc public Phenotype prediction using microarray data: approach of the best overall team in the IMPROVER Diagnostic Signature Challenge 2024-12-27
bioconductor-keggorthology public graph support for KO, KEGG Orthology 2024-12-27
bioconductor-kegglincs public Visualize all edges within a KEGG pathway and overlay LINCS data 2024-12-27
bioconductor-dose public Disease Ontology Semantic and Enrichment analysis 2024-12-27
bioconductor-translatome public Comparison between multiple levels of gene expression 2024-12-27
bioconductor-tin public Transcriptome instability analysis 2024-12-27
perl-specio public Type constraints and coercions for Perl 2024-12-27
bioconductor-flagme public Analysis of Metabolomics GC/MS Data 2024-12-27
bioconductor-webbioc public Bioconductor Web Interface 2024-12-27
bioconductor-camera public Collection of annotation related methods for mass spectrometry data 2024-12-27
bioconductor-isomirs public Analyze isomiRs and miRNAs from small RNA-seq 2024-12-27
bioconductor-oppar public Outlier profile and pathway analysis in R 2024-12-27
bioconductor-tscan public Tools for Single-Cell Analysis 2024-12-27
bioconductor-gsva public Gene Set Variation Analysis for Microarray and RNA-Seq Data 2024-12-27
bioconductor-cnorfuzzy public Addon to CellNOptR: Fuzzy Logic 2024-12-27
bioconductor-cnorode public ODE add-on to CellNOptR 2024-12-27
bioconductor-cellnoptr public Training of boolean logic models of signalling networks using prior knowledge networks and perturbation data 2024-12-27
bioconductor-oncosimulr public Forward Genetic Simulation of Cancer Progression with Epistasis 2024-12-27
bioconductor-segmentseq public Methods for identifying small RNA loci from high-throughput sequencing data 2024-12-27
bioconductor-streamer public Enabling stream processing of large files 2024-12-27
bioconductor-chipsim public Simulation of ChIP-seq experiments 2024-12-27
bioconductor-rbioinf public RBioinf 2024-12-27
bioconductor-rtreemix public Rtreemix: Mutagenetic trees mixture models. 2024-12-27
bioconductor-nucler public Nucleosome positioning package for R 2024-12-27
bioconductor-rgraphviz public Provides plotting capabilities for R graph objects 2024-12-27
bioconductor-basecallqc public Working with Illumina Basecalling and Demultiplexing input and output files 2024-12-27
bioconductor-otubase public Provides structure and functions for the analysis of OTU data 2024-12-27
bioconductor-rbgl public An interface to the BOOST graph library 2024-12-27
bioconductor-genefilter public genefilter: methods for filtering genes from high-throughput experiments 2024-12-27
r-wgcna public Functions necessary to perform Weighted Correlation Network Analysis on high-dimensional data as originally described in Horvath and Zhang (2005) <doi:10.2202/1544-6115.1128> and Langfelder and Horvath (2008) <doi:10.1186/1471-2105-9-559>. Includes functions for rudimentary data cleaning, construction of correlation networks, module identification, summarization, and relating of variables and modules to sample traits. Also includes a number of utility functions for data manipulation and visualization. 2024-12-27
bioconductor-graph public graph: A package to handle graph data structures 2024-12-27
bioconductor-gosemsim public GO-terms Semantic Similarity Measures 2024-12-27
bioconductor-interactionset public Base Classes for Storing Genomic Interaction Data 2024-12-27
bioconductor-scran public Methods for Single-Cell RNA-Seq Data Analysis 2024-12-27
bioconductor-deseq2 public Differential gene expression analysis based on the negative binomial distribution 2024-12-27
bioconductor-xcms public LC-MS and GC-MS Data Analysis 2024-12-27
bioconductor-msnbase public Base Functions and Classes for Mass Spectrometry and Proteomics 2024-12-27
bioconductor-apeglm public Approximate posterior estimation for GLM coefficients 2024-12-27
bioconductor-monocle public Clustering, differential expression, and trajectory analysis for single- cell RNA-Seq 2024-12-27
bracken public Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample. 2024-12-27
bioconductor-ioniser public Quality Assessment Tools for Oxford Nanopore MinION data 2024-12-27
bioconductor-systempiper public systemPipeR: Workflow Environment for Data Analysis and Report Generation 2024-12-26
bioconductor-rsvsim public RSVSim: an R/Bioconductor package for the simulation of structural variations 2024-12-26
bioconductor-dada2 public Accurate, high-resolution sample inference from amplicon sequencing data 2024-12-26
r-gkmsvm public Imports the 'gkmSVM' v2.0 functionalities into R <http://www.beerlab.org/gkmsvm/> It also uses the 'kernlab' library (separate R package by different authors) for various SVM algorithms. 2024-12-26
bioconductor-wiggleplotr public Make read coverage plots from BigWig files 2024-12-26
bioconductor-roar public Identify differential APA usage from RNA-seq alignments 2024-12-26
bioconductor-hitc public High Throughput Chromosome Conformation Capture analysis 2024-12-26
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