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Package Name Access Summary Updated
bioconductor-txdb.dmelanogaster.ucsc.dm6.ensgene public Annotation package for TxDb object(s) 2024-12-28
bioconductor-txdb.rnorvegicus.ucsc.rn5.refgene public Annotation package for TxDb object(s) 2024-12-28
bioconductor-txdb.mmusculus.ucsc.mm10.knowngene public Annotation package for TxDb object(s) 2024-12-28
bioconductor-geneattribution public Identification of candidate genes associated with genetic variation 2024-12-28
bioconductor-homo.sapiens public Contains the Homo.sapiens object to access data from several related annotation packages. 2024-12-28
bioconductor-cpvsnp public Gene set analysis methods for SNP association p-values that lie in genes in given gene sets 2024-12-28
bioconductor-txdb.scerevisiae.ucsc.saccer3.sgdgene public Exposes an annotation databases generated from UCSC by exposing these as TxDb objects 2024-12-28
bioconductor-ivas public Identification of genetic Variants affecting Alternative Splicing 2024-12-28
bioconductor-variantannotation public Annotation of Genetic Variants 2024-12-28
bioconductor-casper public Characterization of Alternative Splicing based on Paired-End Reads 2024-12-28
bioconductor-maftools public Summarize, Analyze and Visualize MAF Files 2024-12-28
bioconductor-ggcyto public Visualize Cytometry data with ggplot 2024-12-28
control-freec public Copy number and genotype annotation from whole genome and whole exome sequencing data. 2024-12-27
bioconductor-rtracklayer public R interface to genome annotation files and the UCSC genome browser 2024-12-27
bioconductor-genomicalignments public Representation and manipulation of short genomic alignments 2024-12-27
bioconductor-csaw public ChIP-Seq Analysis with Windows 2024-12-27
bioconductor-rhtslib public HTSlib high-throughput sequencing library as an R package 2024-12-27
r-spp public Analysis of ChIP-seq and other functional sequencing data [Kharchenko PV (2008) <DOI:10.1038/nbt.1508>]. 2024-12-27
bioconductor-rsamtools public Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import 2024-12-27
bioconductor-bamsignals public Extract read count signals from bam files 2024-12-27
bioconductor-netpathminer public NetPathMiner for Biological Network Construction, Path Mining and Visualization 2024-12-27
bioconductor-wavcluster public Sensitive and highly resolved identification of RNA-protein interaction sites in PAR-CLIP data 2024-12-27
bioconductor-txdb.dmelanogaster.ucsc.dm3.ensgene public Exposes an annotation databases generated from UCSC by exposing these as TxDb objects 2024-12-27
bioconductor-annotationhubdata public Transform public data resources into Bioconductor Data Structures 2024-12-27
bioconductor-txdb.hsapiens.ucsc.hg38.knowngene public Annotation package for TxDb object(s) 2024-12-27
bioconductor-txdb.hsapiens.ucsc.hg19.knowngene public Exposes an annotation databases generated from UCSC by exposing these as TxDb objects 2024-12-27
bioconductor-txdb.hsapiens.ucsc.hg18.knowngene public Exposes an annotation databases generated from UCSC by exposing these as TxDb objects 2024-12-27
bioconductor-txdb.celegans.ucsc.ce11.refgene public Exposes an annotation databases generated from UCSC by exposing these as TxDb objects 2024-12-27
bioconductor-biocgraph public Graph examples and use cases in Bioinformatics 2024-12-27
bioconductor-globalancova public Global test for groups of variables via model comparisons 2024-12-27
bioconductor-agdex public Agreement of Differential Expression Analysis 2024-12-27
bioconductor-npgsea public Permutation approximation methods for gene set enrichment analysis (non-permutation GSEA) 2024-12-27
bioconductor-category public Category Analysis 2024-12-27
bioconductor-promise public PRojection Onto the Most Interesting Statistical Evidence 2024-12-27
bioconductor-bicare public Biclustering Analysis and Results Exploration 2024-12-27
bioconductor-gsri public Gene Set Regulation Index 2024-12-27
bioconductor-splinetimer public Time-course differential gene expression data analysis using spline regression models followed by gene association network reconstruction 2024-12-27
bioconductor-tissueenrich public Tissue-specific gene enrichment analysis 2024-12-27
bioconductor-mlinterfaces public Uniform interfaces to R machine learning procedures for data in Bioconductor containers 2024-12-27
bioconductor-sva public Surrogate Variable Analysis 2024-12-27
bioconductor-covrna public Multivariate Analysis of Transcriptomic Data 2024-12-27
bioconductor-genemeta public MetaAnalysis for High Throughput Experiments 2024-12-27
bioconductor-peca public Probe-level Expression Change Averaging 2024-12-27
bioconductor-classifyr public A framework for cross-validated classification problems, with applications to differential variability and differential distribution testing 2024-12-27
r-sartools public Statistical Analysis of RNA-Seq data 2024-12-27
bioconductor-cntools public Convert segment data into a region by sample matrix to allow for other high level computational analyses. 2024-12-27
bioconductor-a4base public Automated Affymetrix Array Analysis Base Package 2024-12-27
bioconductor-annmap public Genome annotation and visualisation package pertaining to Affymetrix arrays and NGS analysis. 2024-12-27
bioconductor-zinbwave public Zero-Inflated Negative Binomial Model for RNA-Seq Data 2024-12-27
bioconductor-sim public Integrated Analysis on two human genomic datasets 2024-12-27
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