bioconductor-motifstack
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public |
Plot stacked logos for single or multiple DNA, RNA and amino acid sequence
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2024-12-31 |
bioconductor-chromvar
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public |
Chromatin Variation Across Regions
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2024-12-31 |
r-deconstructsigs
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public |
Takes sample information in the form of the fraction of mutations in each of 96 trinucleotide contexts and identifies the weighted combination of published signatures that, when summed, most closely reconstructs the mutational profile.
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2024-12-31 |
bioconductor-chipcomp
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public |
Quantitative comparison of multiple ChIP-seq datasets
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2024-12-31 |
bioconductor-codex
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public |
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
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2024-12-31 |
bioconductor-madseq
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public |
Mosaic Aneuploidy Detection and Quantification using Massive Parallel Sequencing Data
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2024-12-31 |
bioconductor-traser
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public |
GWAS trait-associated SNP enrichment analyses in genomic intervals
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2024-12-31 |
bioconductor-fccac
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public |
functional Canonical Correlation Analysis to evaluate Covariance between nucleic acid sequencing datasets
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2024-12-31 |
bioconductor-cexor
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public |
An R package to uncover high-resolution protein-DNA interactions in ChIP-exo replicates
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2024-12-31 |
bioconductor-snphood
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public |
SNPhood: Investigate, quantify and visualise the epigenomic neighbourhood of SNPs using NGS data
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2024-12-31 |
bioconductor-varianttools
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public |
Tools for Exploratory Analysis of Variant Calls
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2024-12-31 |
bioconductor-dss
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public |
Dispersion shrinkage for sequencing data
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2024-12-31 |
bioconductor-bsseq
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public |
Analyze, manage and store whole-genome methylation data
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2024-12-31 |
bioconductor-mutationalpatterns
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public |
Comprehensive genome-wide analysis of mutational processes
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2024-12-31 |
bioconductor-titancna
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public |
Subclonal copy number and LOH prediction from whole genome sequencing of tumours
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2024-12-31 |
bioconductor-myvariant
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public |
Accesses MyVariant.info variant query and annotation services
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2024-12-31 |
bioconductor-bbcanalyzer
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public |
BBCAnalyzer: an R/Bioconductor package for visualizing base counts
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2024-12-31 |
bioconductor-uniquorn
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public |
Identification of cancer cell lines based on their weighted mutational/ variational fingerprint
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2024-12-31 |
bioconductor-purecn
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public |
Copy number calling and SNV classification using targeted short read sequencing
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2024-12-31 |
bioconductor-genomicfiles
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public |
Distributed computing by file or by range
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2024-12-31 |
bioconductor-helloranges
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public |
Introduce *Ranges to bedtools users
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2024-12-31 |
bioconductor-basic4cseq
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public |
Basic4Cseq: an R/Bioconductor package for analyzing 4C-seq data
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2024-12-31 |
bioconductor-vanillaice
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public |
A Hidden Markov Model for high throughput genotyping arrays
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2024-12-31 |
bioconductor-tfbstools
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public |
Software Package for Transcription Factor Binding Site (TFBS) Analysis
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2024-12-31 |
bioconductor-hdf5array
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public |
HDF5 datasets as array-like objects in R
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2024-12-31 |
bioconductor-cleanupdtseq
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public |
cleanUpdTSeq cleans up artifacts from polyadenylation sites from oligo(dT)-mediated 3' end RNA sequending data
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2024-12-31 |
bioconductor-ensdb.hsapiens.v75
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public |
Exposes an annotation databases generated from Ensembl.
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2024-12-31 |
bioconductor-scrnaseq
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public |
Collection of Public Single-Cell RNA-Seq Datasets
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2024-12-31 |
bioconductor-ruvseq
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public |
Remove Unwanted Variation from RNA-Seq Data
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2024-12-31 |
bioconductor-minfi
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public |
Analyze Illumina Infinium DNA methylation arrays
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2024-12-31 |
bioconductor-affycoretools
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public |
Functions useful for those doing repetitive analyses with Affymetrix GeneChips
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2024-12-31 |
bioconductor-reportingtools
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public |
Tools for making reports in various formats
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2024-12-31 |
bioconductor-chipseq
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public |
chipseq: A package for analyzing chipseq data
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2024-12-30 |
bioconductor-girafe
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public |
Genome Intervals and Read Alignments for Functional Exploration
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2024-12-30 |
bioconductor-cner
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public |
CNE Detection and Visualization
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2024-12-30 |
bioconductor-shortread
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public |
FASTQ input and manipulation
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2024-12-30 |
bioconductor-rhdf5
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public |
R Interface to HDF5
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2024-12-30 |
bioconductor-inspect
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public |
Modeling RNA synthesis, processing and degradation with RNA-seq data
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2024-12-30 |
bioconductor-imas
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public |
Integrative analysis of Multi-omics data for Alternative Splicing
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2024-12-30 |
bioconductor-rtcgatoolbox
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public |
A new tool for exporting TCGA Firehose data
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2024-12-30 |
bioconductor-rgreat
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public |
GREAT Analysis - Functional Enrichment on Genomic Regions
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2024-12-30 |
bioconductor-rcgh
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public |
Comprehensive Pipeline for Analyzing and Visualizing Array-Based CGH Data
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2024-12-30 |
bioconductor-fdb.infiniummethylation.hg19
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public |
Compiled HumanMethylation27 and HumanMethylation450 annotations
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2024-12-30 |
bioconductor-proloc
|
public |
A unifying bioinformatics framework for spatial proteomics
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2024-12-30 |
bioconductor-gostats
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public |
Tools for manipulating GO and microarrays
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2024-12-30 |
bioconductor-doppelgangr
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public |
Identify likely duplicate samples from genomic or meta-data
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2024-12-30 |
bioconductor-trigger
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public |
Transcriptional Regulatory Inference from Genetics of Gene ExpRession
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2024-12-30 |
bioconductor-ballgown
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public |
Flexible, isoform-level differential expression analysis
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2024-12-30 |
r-leapp
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public |
These functions take a gene expression value matrix, a primary covariate vector, an additional known covariates matrix. A two stage analysis is applied to counter the effects of latent variables on the rankings of hypotheses. The estimation and adjustment of latent effects are proposed by Sun, Zhang and Owen (2011). "leapp" is developed in the context of microarray experiments, but may be used as a general tool for high throughput data sets where dependence may be involved.
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2024-12-30 |
bioconductor-rcas
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public |
RNA Centric Annotation System
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2024-12-30 |