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mauve
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public |
Mauve is a system for constructing multiple genome alignments in the presence of large-scale evolutionary events such as rearrangement and inversion
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2025-04-22 |
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perl-storable
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public |
persistence for Perl data structures
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2025-04-22 |
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grid
|
public |
Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at ultra-low sequencing coverage (> 0.2x).
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2025-04-22 |
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itsxpress
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public |
ITSxpress: Software to rapidly trim the Internally Transcribed Spacer (ITS) region from FASTQ files.
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2025-04-22 |
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icount
|
public |
Computational pipeline for analysis of iCLIP data
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2025-04-22 |
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biopet-basecounter
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public |
BaseCounter counts the bases from genes and transcripts and outputs information on the counts in exonic and intronic regions as well as information on the counts on the sense and antisense strands.
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2025-04-22 |
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sshmm
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public |
ssHMM is an RNA motif finder that recovers sequence-structure motifs from RNA-binding protein data, such as CLIP-Seq data.
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2025-04-22 |
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gbsx
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public |
Toolkit for experimental design and demultiplexing genotyping by sequencing experiments
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2025-04-22 |
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anndata
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public |
An annotated data matrix.
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2025-04-22 |
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regtools
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public |
Tools that integrate DNA-seq and RNA-seq data to help interpret mutations in a regulatory and splicing context.
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2025-04-22 |
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alignstats
|
public |
Comprehensive alignment, whole-genome coverage, and capture coverage statistics.
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2025-04-22 |
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biopet-seattleseqkit
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public |
#### Tool - Filter This tool can filter a seattle seq file.
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2025-04-22 |
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mauvealigner
|
public |
The mauveAligner and progressiveMauve command-line tools for generating multiple genome alignments in the presence of large-scale evolutionary events
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2025-04-22 |
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phenix
|
public |
Public Health England SNP calling pipeline
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2025-04-22 |
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metaquant
|
public |
Quantitative microbiome analysis
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2025-04-22 |
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scvi
|
public |
Single-cell Variational Inference
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2025-04-22 |
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perl-string-random
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public |
Perl module to generate random strings based on a pattern
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2025-04-22 |
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libmems
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public |
libMems is a freely available software development library to support DNA string matching and comparative genomics.
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2025-04-22 |
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ucsc-bedjointaboffset
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public |
given a bed file and tab file where each have a column with matching values: first get the value of column0, the offset and line length from inTabFile. Then go over the bed file, use the name field and append its offset and length to the bed file as two separate fields. Write the new bed file to outBed.
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2025-04-22 |
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ucsc-endsinlf
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public |
Check that last letter in files is end of line
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2025-04-22 |
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ucsc-gensub2
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public |
version 12.18
|
2025-04-22 |
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ucsc-hgloadsqltab
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public |
Load table into database from SQL and text files.
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2025-04-22 |
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ucsc-para
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public |
version 12.18
|
2025-04-22 |
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ucsc-parahub
|
public |
parasol hub server version 12.18
|
2025-04-22 |
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ucsc-parahubstop
|
public |
version 12.18
|
2025-04-22 |
