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perl-ipc-run3
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public |
run a subprocess with input/ouput redirection
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2025-04-22 |
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perl-class-singleton
|
public |
Base class for creating singleton objects
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2025-04-22 |
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r-ichorcna
|
public |
Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.
|
2025-04-22 |
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perl-package-stash-xs
|
public |
faster and more correct implementation of the Package::Stash API
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2025-04-22 |
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gem3-mapper
|
public |
The GEM read mapper (v3).
|
2025-04-22 |
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pheniqs
|
public |
Pheniqs is a flexible generic barcode classifier for high-throughput next-gen sequencing written in multi threaded C++11. It caters to a wide variety of experimental designs by addressing multiple combinatorial index tags in arbitrary locations along reads. Pheniqs implements a noise and quality aware probabilistic classifier with improved accuracy over standard edit distance methods and reports classification quality in standard SAM auxiliary tags. Please not configuation syntax has slightly changed for 2.1.x version.
|
2025-04-22 |
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bamclipper
|
public |
Remove primer sequence from BAM alignments by soft-clipping.
|
2025-04-22 |
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ssake
|
public |
SSAKE is a genomics application for de novo assembly of millions of very short DNA sequences.
|
2025-04-22 |
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biopet-validatevcf
|
public |
ValidateVcf validates a VCF file against a reference genomes.
|
2025-04-22 |
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biopet-validateannotation
|
public |
ValidateAnnotationvalidates whether an annotation file is correct.
|
2025-04-22 |
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ldhelmet
|
public |
Software program for statistical inference of fine-scale crossover recombination rates from population genetic data.
|
2025-04-22 |
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biopet-vcffilter
|
public |
This tool enables a user to filter VCF files.
|
2025-04-22 |
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lightstringgraph
|
public |
LightStringGraphs (LSG) is an external memory string graph construction tool.
|
2025-04-22 |
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harvesttools
|
public |
HarvestTools is a part of the Harvest software suite and provides file conversion between Gingr files and various standard text formats
|
2025-04-22 |
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parsnp
|
public |
Parsnp is a command-line-tool for efficient microbial core genome alignment and SNP detection.
|
2025-04-22 |
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conus
|
public |
CONUS is an implementation of simple stochastic context-free grammars for RNA secondary structure analysis.CONUS developed for exploring the consequences of different single sequence SCFG designs in predicting RNA secondary structure.
|
2025-04-22 |
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perl-list-moreutils-xs
|
public |
Provide the stuff missing in List::Util in XS
|
2025-04-22 |
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lexmapr
|
public |
A Lexicon and Rule-Based Tool for Translating Short Biomedical Specimen Descriptions into Semantic Web Ontology Terms
|
2025-04-22 |
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plascope
|
public |
PlaScope is a targeted approach to assess the plasmidome of bacteria.
|
2025-04-22 |
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perl-version
|
public |
Structured version objects
|
2025-04-22 |
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perl-text-abbrev
|
public |
abbrev - create an abbreviation table from a list
|
2025-04-22 |
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perl-cpan-meta-yaml
|
public |
Read and write a subset of YAML for CPAN Meta files
|
2025-04-22 |
|
perl-json-pp
|
public |
JSON::XS compatible pure-Perl module.
|
2025-04-22 |
|
arboreto
|
public |
Scalable gene regulatory network inference using tree-based ensemble regressors
|
2025-04-22 |
|
sequencetools
|
public |
A tool (pileupCaller) for processing ancient DNA sequencing data
|
2025-04-22 |
