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pairix
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public |
2D indexing on bgzipped text files of paired genomic coordinates
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2024-12-17 |
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r-whopgenome
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public |
Provides very fast access to whole genome, population scale variation data from VCF files and sequence data from FASTA-formatted files. It also reads in alignments from FASTA, Phylip, MAF and other file formats. Provides easy-to-use interfaces to genome annotation from UCSC and Bioconductor and gene ontology data from AmiGO and is capable to read, modify and write PLINK .PED-format pedigree files.
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2024-12-17 |
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mrbayes
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public |
Bayesian Inference of Phylogeny
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2024-12-17 |
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beagle-lib
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public |
general purpose library for evaluating the likelihood of sequence evolution on trees
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2024-12-17 |
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bioconductor-dnacopy
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public |
DNA Copy Number Data Analysis
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2024-12-17 |
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bioconductor-amountain
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public |
Active modules for multilayer weighted gene co-expression networks: a continuous optimization approach
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2024-12-17 |
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bellmans-gapc
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public |
A language and compiler for algebraic dynamic programming.
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2024-12-17 |
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bioconductor-cispath
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public |
Visualization and management of the protein-protein interaction networks.
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2024-12-17 |
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bioconductor-flowpeaks
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public |
An R package for flow data clustering
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2024-12-17 |
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bioconductor-gdsfmt
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public |
R Interface to CoreArray Genomic Data Structure (GDS) Files
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2024-12-17 |
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bioconductor-fithic
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public |
Confidence estimation for intra-chromosomal contact maps
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2024-12-17 |
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bioconductor-hmmcopy
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public |
Copy number prediction with correction for GC and mappability bias for HTS data
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2024-12-17 |
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bioconductor-biocparallel
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public |
Bioconductor facilities for parallel evaluation
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2024-12-17 |
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lofreq
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public |
A fast and sensitive variant-caller for inferring SNVs and indels from next-generation sequencing data
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2024-12-17 |
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rmats
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public |
MATS is a computational tool to detect differential alternative splicing events from RNA-Seq data.
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2024-12-17 |
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bioconductor-rbowtie
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public |
R bowtie wrapper
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2024-12-17 |
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bioconductor-cmap
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public |
Annotation data file for cMAP assembled using data from public data repositories
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2024-12-17 |
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bioconductor-jaspar2016
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public |
Data package for JASPAR 2016
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2024-12-17 |
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bioconductor-egseadata
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public |
Gene set collections for the EGSEA package
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2024-12-17 |
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bioconductor-copyhelper
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public |
Helper files for CopywriteR
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2024-12-17 |
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bioconductor-seq2pathway.data
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public |
data set for R package seq2pathway
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2024-12-17 |
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mhcflurry
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public |
MHC Binding Predictor
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2024-12-17 |
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bioconductor-gagedata
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public |
Auxillary data for gage package
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2024-12-17 |
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bioconductor-kodata
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public |
LINCS Knock-Out Data Package
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2024-12-17 |
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bioconductor-cohcapanno
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public |
Annotations for City of Hope CpG Island Analysis Pipeline
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2024-12-17 |
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bioconductor-simpintlists
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public |
The package contains BioGRID interactions for various organisms in a simple format
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2024-12-17 |
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bioconductor-cmap2data
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public |
Connectivity Map (version 2) Data
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2024-12-17 |
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bioconductor-snageedata
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public |
SNAGEE data
|
2024-12-17 |
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bioconductor-snprelate
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public |
Parallel Computing Toolset for Relatedness and Principal Component Analysis of SNP Data
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2024-12-17 |
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bioconductor-pchicdata
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public |
Promoter Capture Hi-C data
|
2024-12-17 |
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bioconductor-gcspikelite
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public |
Spike-in data for GC/MS data and methods within flagme
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2024-12-17 |
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bioconductor-mspuritydata
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public |
Fragmentation spectral libraries and data to test the msPurity package
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2024-12-17 |
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bioconductor-fgsea
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public |
Fast Gene Set Enrichment Analysis
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2024-12-17 |
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bioconductor-chromstardata
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public |
ChIP-seq data for Demonstration Purposes
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2024-12-17 |
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bioconductor-rtcga.mrna
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public |
mRNA datasets from The Cancer Genome Atlas Project
|
2024-12-17 |
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bioconductor-jaspar2018
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public |
Data package for JASPAR 2018. To search this databases, please use the package TFBSTools (>= 1.15.6).
|
2024-12-17 |
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bioconductor-ternarynet
|
public |
Ternary Network Estimation
|
2024-12-17 |
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bioconductor-chemminer
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public |
Cheminformatics Toolkit for R
|
2024-12-17 |
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bioconductor-genomeinfodbdata
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public |
Species and taxonomy ID look up tables used by GenomeInfoDb
|
2024-12-17 |
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bioconductor-bacon
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public |
Controlling bias and inflation in association studies using the empirical null distribution
|
2024-12-17 |
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bioconductor-hsmmsinglecell
|
public |
Single-cell RNA-Seq for differentiating human skeletal muscle myoblasts (HSMM)
|
2024-12-17 |
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bioconductor-beclear
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public |
Correction of batch effects in DNA methylation data
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2024-12-17 |
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bioconductor-stemhypoxia
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public |
Differentiation of Human Embryonic Stem Cells under Hypoxia gene expression dataset by Prado-Lopez et al. (2010)
|
2024-12-17 |
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bioconductor-cnanorm
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public |
A normalization method for Copy Number Aberration in cancer samples
|
2024-12-17 |
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bioconductor-arrmdata
|
public |
Example dataset for normalization of Illumina 450k Methylation data
|
2024-12-17 |
|
r-stitch
|
public |
STITCH - Sequencing To Imputation Through Constructing Haplotypes.
|
2024-12-17 |
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bioconductor-biobase
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public |
Biobase: Base functions for Bioconductor
|
2024-12-17 |
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bioconductor-lungcanceracvssccgeo
|
public |
A lung cancer dataset that can be used with maPredictDSC package for developing outcome prediction models from Affymetrix CEL files.
|
2024-12-17 |
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bedops
|
public |
High-performance genomic feature operations.
|
2024-12-17 |
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bioconductor-drugvsdiseasedata
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public |
Drug versus Disease Data
|
2024-12-17 |
