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xhmm
|
public |
XHMM (eXome-Hidden Markov Model).
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2025-04-22 |
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centroid_rna_package
|
public |
Collection of RNA secondary structure prediction programs based on gamma-centroid estimator (Hamada et. al. 2009)
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2025-04-22 |
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perl-test-memory-cycle
|
public |
Verifies code hasn't left circular references
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2025-04-22 |
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perl-devel-cycle
|
public |
Find memory cycles in objects
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2025-04-22 |
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perl-padwalker
|
public |
play with other peoples' lexical variables
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2025-04-22 |
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novasplice
|
public |
NovaSplice is a python tool to predict novel intronic splice sites from a given VCF file
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2025-04-22 |
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perl-test-fork
|
public |
test code which forks
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2025-04-22 |
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genenotebook
|
public |
A colleborative notebook for comparative genomics
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2025-04-22 |
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fastqe
|
public |
A emoji based bioinformatics command line tool.
|
2025-04-22 |
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perl-graphics-colorobject
|
public |
convert between color spaces
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2025-04-22 |
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perl-graphics-colornames
|
public |
defines RGB values for common color names
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2025-04-22 |
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perl-module-loaded
|
public |
Mark modules as loaded/unloaded
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2025-04-22 |
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lordfast
|
public |
Sensitive and Fast Alignment Search Tool for Long Read sequencing Data
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2025-04-22 |
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connectome-workbench
|
public |
Connectome Workbench is an open source, freely available visualization and discovery tool used to map neuroimaging data, especially data generated by the Human Connectome Project
|
2025-04-22 |
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slamdunk
|
public |
Slamdunk is a software tool for SLAMseq data analysis.
|
2025-04-22 |
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deepbinner
|
public |
A signal-level demultiplexer for Oxford Nanopore reads.
|
2025-04-22 |
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phantompeakqualtools
|
public |
This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to obtain robust estimates of the predominant fragment length or characteristic tag shift values in these assays.
|
2025-04-22 |
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hotspot3d
|
public |
This 3D proximity tool can be used to identify mutation hotspots from linear protein sequence and correlate the hotspots with known or potentially interacting domains, mutations, or drugs. Mutation-mutation and mutation-drug clusters can also be identified and viewed.
|
2025-04-22 |
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wes-service-client
|
public |
Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows; client support only
|
2025-04-22 |
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deepsvr
|
public |
DeepSVR stands for deep somatic variant refinement. It uses deep learning to classify real somatic and anomalous variants in paired tumor sequencing data.
|
2025-04-22 |
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dropseq_tools
|
public |
Package for the analysis of Drop-seq data developed by Jim Nemesh in the McCarroll Lab
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2025-04-22 |
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chado-tools
|
public |
Tools to access CHADO databases
|
2025-04-22 |
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pbcoretools
|
public |
CLI tools and add-ons for PacBio's core APIs
|
2025-04-22 |
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jcvi
|
public |
Python utility libraries on genome assembly, annotation, and comparative genomics
|
2025-04-22 |
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r-htssip
|
public |
Functions for analyzing high throughput sequencing stable isotope probing (HTS-SIP) data. Analyses include high resolution stable isotope probing (HR-SIP), multi-window high resolution stable isotope probing (MW-HR-SIP), and quantitative stable isotope probing (q-SIP).
|
2025-04-22 |
