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stream_atac
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public |
STREAM-Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data. Preprocessing steps for single cell atac-seq data.
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2023-06-16 |
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upload-test-8ebef84a
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public |
No Summary
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2023-06-16 |
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artemis
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public |
A set of Java genome visualization tools including the Artemis genome browser & annotation tool, ACT DNA sequence comparison viewer, DNA Plotter image generation tool and the BamView BAM/CRAM file viewer.
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2023-06-16 |
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minnow
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public |
A principled framework for rapid simulation of dscRNA-seq data at the read level
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2023-06-16 |
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imctools
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public |
An Image Mass Cytometry (IMC) file conversion tool that aims to convert IMC rawfiles (.mcd, .txt) into an intermediary ome.tiff, containing all the relevant metadata. Further it contains tools to generate simpler tiff files that can be directly be used as input files for e.g. CellProfiller, Ilastik, Fiji etc
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2023-06-16 |
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srnapipe
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public |
Pipeline for bioinformatic in-depth exploration of small RNA-seq data
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2023-06-16 |
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upload-test-d9f166a2
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public |
No Summary
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2023-06-16 |
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pypairs
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public |
A python scRNA-Seq classifier
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2023-06-16 |
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perl-html-form
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public |
Class that represents an HTML form element
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2023-06-16 |
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perl-www-mechanize
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public |
Handy web browsing in a Perl object
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2023-06-16 |
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islandpath
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public |
IslandPath-DIMOB is a standalone software to predict genomic islands in bacterial and archaeal genomes based on the presence of dinucleotide biases and mobility genes.
Genomic islands (GIs) are clusters of genes in prokaryotic genomes of probable horizontal origin. GIs are disproportionately associated with microbial adaptations of medical or environmental interest.
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2023-06-16 |
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illumina-cleanup
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public |
Nextflow pipeline for pre-processing Illumina FASTQ files
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2023-06-16 |
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pathogist
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public |
Calibrated multi-criterion genomic analysis for public health microbiology
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2023-06-16 |
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piret
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public |
A tool for conducting RNA seq analysis.
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2023-06-16 |
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gerp
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public |
GERP identifies constrained elements in multiple alignments by quantifying substitution deficits.
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2023-06-16 |
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mofapy
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public |
Multi-Omics Factor Analysis
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2023-06-16 |
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maxquant
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public |
MaxQuant is a quantitative proteomics software package designed for analyzing large mass-spectrometric data sets. License restricted.
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2023-06-16 |
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biotradis
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public |
A set of tools to analyse the output from TraDIS analyses
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2023-06-16 |
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plantcv
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public |
An image processing package for plant phenotyping.
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2023-06-16 |
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bioconductor-proteoqc
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public |
An R package for proteomics data quality control
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2023-06-16 |
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bioconductor-pga
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public |
An package for identification of novel peptides by customized database derived from RNA-Seq
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2023-06-16 |
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unifrac
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public |
Fast phylogenetic diversity calculations
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2023-06-16 |
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perl-moosex-singleton
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public |
Turn your Moose class into a singleton
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2023-06-16 |
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bioconductor-platecore
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public |
Provides basic S4 data structures and routines for analyzing plate based flow cytometry data.
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2023-06-16 |
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kwip
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public |
kWIP implements a de novo, alignment free measure of sample genetic dissimilarity
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2023-06-16 |
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bioconductor-post
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public |
Projection onto Orthogonal Space Testing for High Dimensional Data
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2023-06-16 |
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bioconductor-sapfinder
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public |
A package for variant peptides detection and visualization in shotgun proteomics.
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2023-06-16 |
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consel
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public |
CONSEL calculates the probability value (i.e., p-value) to assess the confidence in the selection problem. Although CONSEL is applicable to any selection problem, it is mainly designed for the phylogenetic tree selection
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2023-06-16 |
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bioconductor-shinytandem
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public |
Provides a GUI for rTANDEM
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2023-06-16 |
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bioconductor-mitoodedata
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public |
Experimental data associated to the paper "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
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2023-06-16 |
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upload-test-d3a51eda
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public |
No Summary
|
2023-06-16 |
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bioconductor-rnaseqrdata
|
public |
RNASeqRData: sample data for RNASeqR software package demonstration
|
2023-06-16 |
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bioconductor-gaia
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public |
GAIA: An R package for genomic analysis of significant chromosomal aberrations.
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2023-06-16 |
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bioconductor-bioseqclass
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public |
Classification for Biological Sequences
|
2023-06-16 |
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r-taxonomizr
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public |
Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to downloads NCBI data dumps and create a local database for fast and local taxonomic assignment.
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2023-06-16 |
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bioconductor-mitoode
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public |
Implementation of the differential equation model described in "Dynamical modelling of phenotypes in a genome-wide RNAi live-cell imaging assay"
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2023-06-16 |
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bioconductor-prize
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public |
Prize: an R package for prioritization estimation based on analytic hierarchy process
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2023-06-16 |
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bioconductor-pcagopromoter.mm.mm9
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public |
pcaGoPromoter.Mm.mm9 is a data package used by pcaGoPromoter
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2023-06-16 |
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bioconductor-flowfit
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public |
Estimate proliferation in cell-tracking dye studies
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2023-06-16 |
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bioconductor-rtandem
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public |
Interfaces the tandem protein identification algorithm in R
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2023-06-16 |
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bioconductor-geecc
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public |
Gene Set Enrichment Analysis Extended to Contingency Cubes
|
2023-06-16 |
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bioconductor-clonotyper
|
public |
High throughput analysis of T cell antigen receptor sequences
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2023-06-16 |
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bioconductor-coexnet
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public |
coexnet: An R package to build CO-EXpression NETworks from Microarray Data
|
2023-06-16 |
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r-clvalid
|
public |
Statistical and biological validation of clustering results.
|
2023-06-16 |
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fast5-research
|
public |
ONT Research fast5 read/write package
|
2023-06-16 |
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bioconductor-iontreedata
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public |
Raw MS2, MS3 scans from direct infusion mass spectrometry (DIMS) and a demo ion tree database 'mzDB' derived from the DIMS data are included. The demo database is used to show the functionalities provided by the 'iontree' package, not for the purpose of compound identification by any means.
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2023-06-16 |
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bioconductor-gprege
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public |
Gaussian Process Ranking and Estimation of Gene Expression time-series
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2023-06-16 |
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bioconductor-condcomp
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public |
For a given clustered data, which can also be split into two conditions, this package provides a way to perform a condition comparison on said clustered data. The comparison is performed on each cluster. Several statistics are used and, when analysed in conjunction, they might give some insight regarding the heterogeneity of some of the clusters.
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2023-06-16 |
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changeo
|
public |
A bioinformatics toolkit for processing high-throughput lymphocyte receptor sequencing data. Citations: Gupta, et al (2015) <doi:10.1093/bioinformatics/btv359>.
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2023-06-16 |
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bioconductor-gskb
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public |
Gene Set data for pathway analysis in mouse
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2023-06-16 |
