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bioconductor-bsgenome.drerio.ucsc.danrer6
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer6, Dec. 2008) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.ggallus.ucsc.galgal6
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public |
Full genome sequences for Gallus gallus (UCSC version galGal6)
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2024-12-29 |
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bioconductor-crisprbowtie
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public |
Bowtie-based alignment of CRISPR gRNA spacer sequences
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2024-12-29 |
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bioconductor-bsgenome.ggallus.ucsc.galgal4
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public |
Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal4, Nov. 2011) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.btaurus.ucsc.bostau4
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public |
Full genome sequences for Bos taurus (Cow) as provided by UCSC (bosTau4, Oct. 2007) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-xtrasnplocs.hsapiens.dbsnp144.grch37
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public |
Extra SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 144. The source data files used for this package were created by NCBI on May 29-30, 2015, and contain SNPs mapped to reference genome GRCh37.p13 (a patched version of GRCh37 that doesn't alter chromosomes 1-22, X, Y, MT). While the SNPlocs.Hsapiens.dbSNP144.GRCh37 package contains only molecular variations of class "snp", this package contains molecular variations of other classes (in-del, heterozygous, microsatellite, named-locus, no-variation, mixed, and multinucleotide-polymorphism).
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2024-12-29 |
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bioconductor-beat
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public |
BEAT - BS-Seq Epimutation Analysis Toolkit
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2024-12-29 |
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r-dpeak
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public |
This package provides functions for fitting dPeak, a statistical framework to deconvolve ChIP-seq peaks.
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2024-12-29 |
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bioconductor-bsgenome.drerio.ucsc.danrer7
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public |
Full genome sequences for Danio rerio (Zebrafish) as provided by UCSC (danRer7, Jul. 2010) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.mfuro.ucsc.musfur1
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public |
Full genome sequences for Mustela putorius furo (Ferret) as provided by UCSC (musFur1, Apr. 2011) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.tgondii.toxodb.7.0
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public |
Toxoplasma gondii ME49 (ToxoDB-7.0)
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2024-12-29 |
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bioconductor-repitools
|
public |
Epigenomic tools
|
2024-12-29 |
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bioconductor-bsgenome.mmusculus.ucsc.mm9
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public |
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm9, Jul. 2007) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.cfamiliaris.ucsc.canfam3
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public |
Full genome sequences for Canis lupus familiaris (Dog) as provided by UCSC (canFam3, Sep. 2011) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.ggallus.ucsc.galgal3
|
public |
Full genome sequences for Gallus gallus (Chicken) as provided by UCSC (galGal3, May 2006) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-cliprofiler
|
public |
A package for the CLIP data visualization
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2024-12-29 |
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bioconductor-chipanalyser
|
public |
ChIPanalyser: Predicting Transcription Factor Binding Sites
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2024-12-29 |
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bioconductor-bsgenome.rnorvegicus.ucsc.rn6
|
public |
Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn6, Jul. 2014) and stored in Biostrings objects.
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2024-12-29 |
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bioconductor-bsgenome.mdomestica.ucsc.mondom5
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public |
Full genome sequences for Monodelphis domestica (Opossum) as provided by UCSC (monDom5, Oct. 2006) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-motif2site
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public |
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
|
2024-12-29 |
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bioconductor-snplocs.hsapiens.dbsnp149.grch38
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public |
SNP locations and alleles for Homo sapiens extracted from NCBI dbSNP Build 149. The source data files used for this package were created by NCBI between November 8-12, 2016, and contain SNPs mapped to reference genome GRCh38.p7 (a patched version of GRCh38 that doesn't alter chromosomes 1-22, X, Y, MT). Note that these SNPs can be "injected" in BSgenome.Hsapiens.NCBI.GRCh38 or in BSgenome.Hsapiens.UCSC.hg38.
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2024-12-29 |
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bioconductor-bsgenome.ptroglodytes.ucsc.pantro6
|
public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro6, Jan. 2018) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.minor
|
public |
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected minor alleles (dbSNP151)
|
2024-12-29 |
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bioconductor-bsgenome.amellifera.ucsc.apimel2
|
public |
Full genome sequences for Apis mellifera (Honey Bee) as provided by UCSC (apiMel2, Jan. 2005) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.alyrata.jgi.v1
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public |
Arabidopsis lyrata full genome (JGI version V1.0)
|
2024-12-29 |
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bioconductor-crisprseek
|
public |
Design of target-specific guide RNAs in CRISPR-Cas9, genome-editing systems
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2024-12-29 |
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bioconductor-xnastring
|
public |
Efficient Manipulation of Modified Oligonucleotide Sequences
|
2024-12-29 |
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bioconductor-rgadem
|
public |
de novo motif discovery
|
2024-12-29 |
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bioconductor-bsgenome.hsapiens.ncbi.grch38
|
public |
Full genome sequences for Homo sapiens (Human) as provided by NCBI (GRCh38, 2013-12-17) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-hiannotator
|
public |
Functions for annotating GRanges objects
|
2024-12-29 |
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bioconductor-bsgenome.hsapiens.ncbi.t2t.chm13v2.0
|
public |
T2T-CHM13v2.0 assembly (Homo sapiens) wrapped in a BSgenome object
|
2024-12-29 |
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bioconductor-bsgenome.mmusculus.ucsc.mm8
|
public |
Full genome sequences for Mus musculus (Mouse) as provided by UCSC (mm8, Feb. 2006) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.rnorvegicus.ucsc.rn4
|
public |
Full genome sequences for Rattus norvegicus (Rat) as provided by UCSC (rn4, Nov. 2004) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.hsapiens.ucsc.hg38.dbsnp151.major
|
public |
Full genome sequences for Homo sapiens (UCSC version hg38, based on GRCh38.p12) with injected major alleles (dbSNP151)
|
2024-12-29 |
|
bioconductor-bsgenome.hsapiens.ucsc.hg17
|
public |
Full genome sequences for Homo sapiens (UCSC version hg17)
|
2024-12-29 |
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bioconductor-trnascanimport
|
public |
Importing a tRNAscan-SE result file as GRanges object
|
2024-12-29 |
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bioconductor-bsgenome.athaliana.tair.04232008
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public |
Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects.
|
2024-12-29 |
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bioconductor-bsgenome.mmulatta.ucsc.rhemac3
|
public |
Full genome sequences for Macaca mulatta (Rhesus) as provided by UCSC (rheMac3, Oct. 2010) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.dmelanogaster.ucsc.dm2
|
public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm2, Apr. 2004) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.dmelanogaster.ucsc.dm6
|
public |
Full genome sequences for Drosophila melanogaster (Fly) as provided by UCSC (dm6, Aug. 2014) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-bsgenome.ptroglodytes.ucsc.pantro2
|
public |
Full genome sequences for Pan troglodytes (Chimp) as provided by UCSC (panTro2, Mar. 2006) and stored in Biostrings objects.
|
2024-12-29 |
|
bioconductor-rtrmui
|
public |
A shiny user interface for rTRM
|
2024-12-29 |
|
bioconductor-txdb.athaliana.biomart.plantsmart28
|
public |
Exposes an annotation databases generated from BioMart by exposing these as TxDb objects
|
2024-12-29 |
|
bioconductor-txdb.drerio.ucsc.danrer11.refgene
|
public |
Exposes an annotation databases generated from UCSC by exposing these as TxDb objects
|
2024-12-29 |
|
bioconductor-txdb.cfamiliaris.ucsc.canfam3.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-29 |
|
bioconductor-sctreeviz
|
public |
R/Bioconductor package to interactively explore and visualize single cell RNA-seq datasets with hierarhical annotations
|
2024-12-29 |
|
bioconductor-doubletrouble
|
public |
Identification and classification of duplicated genes
|
2024-12-29 |
|
bioconductor-epivizrstandalone
|
public |
Run Epiviz Interactive Genomic Data Visualization App within R
|
2024-12-29 |
|
bioconductor-txdb.rnorvegicus.ucsc.rn7.refgene
|
public |
Annotation package for TxDb object(s)
|
2024-12-29 |
|
bioconductor-epivizr
|
public |
R Interface to epiviz web app
|
2024-12-29 |
