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bioconductor-motif2site

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Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-motif2site

Usage Tracking

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Description

Detect binding sites using motifs IUPAC sequence or bed coordinates and ChIP-seq experiments in bed or bam format. Combine/compare binding sites across experiments, tissues, or conditions. All normalization and differential steps are done using TMM-GLM method. Signal decomposition is done by setting motifs as the centers of the mixture of normal distribution curves.

About

Summary

Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions

Last Updated

Dec 29, 2024 at 04:33

License

GPL-2

Total Downloads

4.2K

Supported Platforms

noarch