bioconductor-motif2site
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
To install this package, run one of the following:
Detect binding sites using motifs IUPAC sequence or bed coordinates and ChIP-seq experiments in bed or bam format. Combine/compare binding sites across experiments, tissues, or conditions. All normalization and differential steps are done using TMM-GLM method. Signal decomposition is done by setting motifs as the centers of the mixture of normal distribution curves.
Summary
Detect binding sites from motifs and ChIP-seq experiments, and compare binding sites across conditions
Last Updated
Dec 29, 2024 at 04:33
License
GPL-2
Total Downloads
4.2K
Supported Platforms