|
bioconductor-ddpcrclust
|
public |
Clustering algorithm for ddPCR data
|
2024-12-19 |
|
bioconductor-msbackendmsp
|
public |
Mass Spectrometry Data Backend for NIST msp Files
|
2024-12-19 |
|
bioconductor-jaspar2014
|
public |
Data package for JASPAR
|
2024-12-19 |
|
bioconductor-delayedarray
|
public |
A unified framework for working transparently with on-disk and in-memory array-like datasets
|
2024-12-19 |
|
bioconductor-motifcounter
|
public |
R package for analysing TFBSs in DNA sequences
|
2024-12-19 |
|
bioconductor-wgsmapp
|
public |
Mappability tracks of Whole-genome Sequencing from the ENCODE Project
|
2024-12-19 |
|
bioconductor-idpr
|
public |
Profiling and Analyzing Intrinsically Disordered Proteins in R
|
2024-12-19 |
|
r-mmgenome
|
public |
Tools for extracting individual genomes from metagenomes
|
2024-12-19 |
|
bioconductor-metacyto
|
public |
MetaCyto: A package for meta-analysis of cytometry data
|
2024-12-19 |
|
bioconductor-harbchip
|
public |
Experimental Data Package: harbChIP
|
2024-12-19 |
|
bioconductor-bifet
|
public |
Bias-free Footprint Enrichment Test
|
2024-12-19 |
|
bioconductor-seqpattern
|
public |
Visualising oligonucleotide patterns and motif occurrences across a set of sorted sequences
|
2024-12-19 |
|
bioconductor-flowbin
|
public |
Combining multitube flow cytometry data by binning
|
2024-12-19 |
|
bioconductor-degraph
|
public |
Two-sample tests on a graph
|
2024-12-19 |
|
bioconductor-methimpute
|
public |
Imputation-guided re-construction of complete methylomes from WGBS data
|
2024-12-19 |
|
bioconductor-rnbeads.rn5
|
public |
RnBeads.rn5
|
2024-12-19 |
|
bioconductor-bayseq
|
public |
Empirical Bayesian analysis of patterns of differential expression in count data
|
2024-12-19 |
|
bioconductor-fastseg
|
public |
fastseg - a fast segmentation algorithm
|
2024-12-19 |
|
bioconductor-genomictuples
|
public |
Representation and Manipulation of Genomic Tuples
|
2024-12-19 |
|
bioconductor-tdbasedufe
|
public |
Tensor Decomposition Based Unsupervised Feature Extraction
|
2024-12-19 |
|
bioconductor-seqarray
|
public |
Data Management of Large-Scale Whole-Genome Sequence Variant Calls
|
2024-12-19 |
|
bioconductor-muscle
|
public |
Multiple Sequence Alignment with MUSCLE
|
2024-12-19 |
|
r-seqmagick
|
public |
Supports reading and writing sequences for different formats (currently interleaved and sequential formats for 'FASTA' and 'PHYLIP'), file conversion, and manipulation (e.g. filter sequences that contain specify pattern, export consensus sequence from an alignment).
|
2024-12-19 |
|
bioconductor-ncrnatools
|
public |
An R toolkit for non-coding RNA
|
2024-12-19 |
|
bioconductor-genomautomorphism
|
public |
Compute the automorphisms between DNA's Abelian group representations
|
2024-12-19 |
|
bioconductor-pipets
|
public |
Poisson Identification of PEaks from Term-Seq data
|
2024-12-19 |
|
bioconductor-msbackendmassbank
|
public |
Mass Spectrometry Data Backend for MassBank record Files
|
2024-12-19 |
|
bioconductor-generxcluster
|
public |
gRx Differential Clustering
|
2024-12-19 |
|
bioconductor-microrna
|
public |
Data and functions for dealing with microRNAs
|
2024-12-19 |
|
bioconductor-flowcut
|
public |
Automated Removal of Outlier Events and Flagging of Files Based on Time Versus Fluorescence Analysis
|
2024-12-19 |
|
bioconductor-idr2d
|
public |
Irreproducible Discovery Rate for Genomic Interactions Data
|
2024-12-19 |
|
bioconductor-ramr
|
public |
Detection of Rare Aberrantly Methylated Regions in Array and NGS Data
|
2024-12-19 |
|
bioconductor-altcdfenvs
|
public |
alternative CDF environments (aka probeset mappings)
|
2024-12-19 |
|
bioconductor-megadepth
|
public |
megadepth: BigWig and BAM related utilities
|
2024-12-19 |
|
bioconductor-bcseq
|
public |
Fast Sequence Mapping in High-Throughput shRNA and CRISPR Screens
|
2024-12-19 |
|
bioconductor-msbackendmgf
|
public |
Mass Spectrometry Data Backend for Mascot Generic Format (mgf) Files
|
2024-12-19 |
|
ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2024-12-19 |
|
bioconductor-selex
|
public |
Functions for analyzing SELEX-seq data
|
2024-12-19 |
|
bioconductor-packfinder
|
public |
de novo Annotation of Pack-TYPE Transposable Elements
|
2024-12-19 |
|
bioconductor-cindex
|
public |
Chromosome Instability Index
|
2024-12-19 |
|
bioconductor-dmrscan
|
public |
Detection of Differentially Methylated Regions
|
2024-12-19 |
|
bioconductor-brew3r.r
|
public |
R package associated to BREW3R
|
2024-12-19 |
|
bioconductor-universalmotif
|
public |
Import, Modify, and Export Motifs with R
|
2024-12-19 |
|
bioconductor-gmrp
|
public |
GWAS-based Mendelian Randomization and Path Analyses
|
2024-12-19 |
|
bioconductor-sscu
|
public |
Strength of Selected Codon Usage
|
2024-12-19 |
|
bioconductor-transite
|
public |
RNA-binding protein motif analysis
|
2024-12-19 |
|
bioconductor-meigor
|
public |
MEIGOR - MEtaheuristics for bIoinformatics Global Optimization
|
2024-12-19 |
|
bioconductor-qtlizer
|
public |
Comprehensive QTL annotation of GWAS results
|
2024-12-19 |
|
bioconductor-cordon
|
public |
Codon Usage Analysis and Prediction of Gene Expressivity
|
2024-12-19 |
|
bioconductor-scoup
|
public |
Simulate Codons with Darwinian Selection Modelled as an OU Process
|
2024-12-19 |
