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slimfastq
|
public |
slimfastq would efficiently compresses/decompresses fastq files
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2024-12-11 |
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prophex
|
public |
The ProPhex k-mer index.
|
2024-12-11 |
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ucsc-para
|
public |
version 12.18
|
2024-12-11 |
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ucsc-featurebits
|
public |
Correlate tables via bitmap projections.
|
2024-12-11 |
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biolite-tools
|
public |
C++ tools for biolite, a lightweight bioinformatics framework with automated tracking of diagnostics and provenance.
|
2024-12-11 |
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codonw
|
public |
CodonW is a programme designed to simplify the Multivariate analysis (correspondence analysis) of codon and amino acid usage.
|
2024-12-11 |
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lrzip
|
public |
Long Range ZIP or Lzma RZIP. This is a compression program optimised for large files. The larger the file and the more memory you have, the better the compression advantage this will provide, especially once the files are larger than 100MB. The advantage can be chosen to be either size (much smaller than bzip2) or speed (much faster than bzip2).
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2024-12-11 |
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ucsc-chainnet
|
public |
Make alignment nets out of chains
|
2024-12-11 |
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cyushuffle
|
public |
A Cython wrapper over uShuffle - a useful tool for shuffling biological sequences while preserving the k-let counts
|
2024-12-11 |
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thermorawfileparser
|
public |
Wrapper around the .net (C#) ThermoFisher ThermoRawFileReader library for running on Linux with mono
|
2024-12-11 |
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ltr_finder
|
public |
LTR_Finder is an efficient program for finding full-length LTR retrotranspsons in genome sequences.
|
2024-12-11 |
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collect_mgf
|
public |
Collects MGF files and dd_results from an XMass setup_QDD.tcl experiment to a single MGF file.
|
2024-12-11 |
|
yaha
|
public |
No Summary
|
2024-12-11 |
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metacluster
|
public |
No Summary
|
2024-12-11 |
|
phast
|
public |
PHAST is a freely available software package for comparative and evolutionary genomics.
|
2024-12-11 |
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prefersim
|
public |
PReFerSim is an ANSI C program that performs forward simulations under the PRF model
|
2024-12-11 |
|
ima3
|
public |
IMa3 can be used to solve a fundamental problem in evolutionary genetics, which is to jointly consider phylogenetic history and pouplation genetic history, including gene exchange. IMa3 can be used to estimate the rooted phylogenetic tree for multiple populations, and does so while integrating over all possible Isolation-with-Migration models
|
2024-12-11 |
|
ray
|
public |
No Summary
|
2024-12-11 |
|
ucsc-genepredtofakepsl
|
public |
Create a psl of fake-mRNA aligned to gene-preds from a file or table.
|
2024-12-11 |
|
ucsc-rasqlquery
|
public |
Do a SQL-like query on a RA file.
|
2024-12-11 |
|
strawc
|
public |
Straw bound with pybind11
|
2024-12-11 |
|
geco3
|
public |
An efficient DNA sequence compressor using Neural Networks
|
2024-12-11 |
|
gotohscan
|
public |
a search tool that finds shorter sequences (usually genes) in large database sequences (chromosomes, genomes, ..) by computing all semi-global alignments.
|
2024-12-11 |
|
ucsc-gff3togenepred
|
public |
convert a GFF3 file to a genePred file
|
2024-12-11 |
|
r-hgvsparser
|
public |
hgvsParseR
|
2024-12-11 |
|
lightstringgraph
|
public |
LightStringGraphs (LSG) is an external memory string graph construction tool.
|
2024-12-11 |
|
rust-overlaps
|
public |
A fast and secure command line utilility for enumerating all suffix-prefix
overlaps within a set of sequences, satisfying a user-specified minimal
overlap length and maximal error rate.
|
2024-12-11 |
|
genefuse
|
public |
Gene fusion detection and visualization
|
2024-12-11 |
|
gassst
|
public |
GASSST : Global Alignment Short Sequence Search Tool
|
2024-12-11 |
|
ucsc-sqltoxml
|
public |
dump out all or part of a relational database to XML, guided
|
2024-12-11 |
|
genrich
|
public |
Detecting sites of genomic enrichment.
|
2024-12-11 |
|
pardre
|
public |
ParDRe is a parallel tool to remove duplicate reads.
|
2024-12-11 |
|
clearcut
|
public |
The reference implementation for Relaxed Neighbor Joining (RNJ).
|
2024-12-11 |
|
r-ccube
|
public |
R package for clustering and estimating cancer cell fractions (CCF) of somatic variants (SNVs/SVs) from bulk whole genome/exome data.
|
2024-12-11 |
|
r-disprose
|
public |
Set of tools for molecular probes selection and design of a microarray, e.g. the assessment of physical and chemical properties, blast performance, selection according to sensitivity and selectivity. Methods used in package are described in: Lorenz R., Stephan H.B., Höner zu Siederdissen C. et al. (2011) <doi:10.1186/1748-7188-6-26>; Camacho C., Coulouris G., Avagyan V. et al. (2009) <doi:10.1186/1471-2105-10-421>.
|
2024-12-11 |
|
r-abdiv
|
public |
Alpha and Beta Diversity Measures
|
2024-12-11 |
|
ucsc-fafilter
|
public |
Filter fa records, selecting ones that match the specified conditions
|
2024-12-11 |
|
tadarida-d
|
public |
Tadarida-D (Toolbox for Animal Detection on Acoustic Recordings - Detection and Feature extraction part) for Galaxy use.
|
2024-12-11 |
|
autodock
|
public |
AutoDock is a suite of automated docking tools.
|
2024-12-11 |
|
mfqe
|
public |
mfqe is a tool for quickly seperating fasta and fastq files
|
2024-12-11 |
|
pyrle
|
public |
Genomic Rle-objects for Python
|
2024-12-11 |
|
ucsc-getrna
|
public |
Get mrna for GenBank or RefSeq sequences found in a database
|
2024-12-11 |
|
ucsc-hgloadsqltab
|
public |
Load table into database from SQL and text files.
|
2024-12-11 |
|
ucsc-faonerecord
|
public |
Extract a single record from a .FA file
|
2024-12-11 |
|
bx-python
|
public |
Tools for manipulating biological data, particularly multiple sequence alignments
|
2024-12-11 |
|
dig2
|
public |
dig2 is a simple but flexible in silico digester of protein sequences in the FASTA format. It allows for almost any enzyme to be simulated, including MS/MS enzymes to generate CID or ECD/ETD fragments.
|
2024-12-11 |
|
ssu-align
|
public |
SSU-ALIGN: structural alignment of SSU rRNA sequences
|
2024-12-11 |
|
occultercut
|
public |
A package for measuring the local GC-content bias in genomes and fungal species
|
2024-12-11 |
|
samcut
|
public |
samcut is `cut` for sam. Select (cut) columns from the output of `samtools view` using human-readale field names.
|
2024-12-11 |
|
pandaseq
|
public |
No Summary
|
2024-12-11 |
