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bioconductor-gdnax

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Diagnostics for assessing genomic DNA contamination in RNA-seq data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-gdnax

Usage Tracking

1.4.0
1.0.0
2 / 8 versions selected
Downloads (Last 6 months): 0

Description

Provides diagnostics for assessing genomic DNA contamination in RNA-seq data, as well as plots representing these diagnostics. Moreover, the package can be used to get an insight into the strand library protocol used and, in case of strand-specific libraries, the strandedness of the data. Furthermore, it provides functionality to filter out reads of potential gDNA origin.

About

Summary

Diagnostics for assessing genomic DNA contamination in RNA-seq data

Last Updated

Jan 3, 2025 at 18:36

License

Artistic-2.0

Total Downloads

1.0K

Supported Platforms

noarch