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qcumber
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public |
Quality control, quality trimming, adapter removal and sequence content check of NGS data.
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2025-04-22 |
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bioconductor-methylumi
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public |
Handle Illumina methylation data
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2025-04-22 |
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abruijn
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public |
Long read assembly via A-Bruijn graph
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2025-04-22 |
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ig-checkflowtypes
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public |
quick flow-related datatype for galaxy checks
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2025-04-22 |
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bioconductor-ggcyto
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public |
Visualize Cytometry data with ggplot
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2025-04-22 |
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bioconductor-flowworkspace
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public |
Infrastructure for representing and interacting with gated and ungated cytometry data sets.
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2025-04-22 |
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bioconductor-ncdfflow
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public |
ncdfFlow: A package that provides HDF5 based storage for flow cytometry data.
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2025-04-22 |
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bioconductor-flowsom
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public |
Using self-organizing maps for visualization and interpretation of cytometry data
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2025-04-22 |
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bioconductor-flowutils
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public |
Utilities for flow cytometry
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2025-04-22 |
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rmats2sashimiplot
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public |
rmats2sashimiplot
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2025-04-22 |
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bioconductor-fdb.infiniummethylation.hg19
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public |
Compiled HumanMethylation27 and HumanMethylation450 annotations
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2025-04-22 |
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clustergrammer
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public |
A python module for the Clustergrammer visualization project
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2025-04-22 |
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afterqc
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public |
Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats.
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2025-04-22 |
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connor
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public |
A command-line tool to deduplicate bam files based on custom, inline barcoding.
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2025-04-22 |
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muse
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public |
An accurate and ultra-fast somatic point mutation calling tool for whole-genome sequencing (WGS) and whole-exome sequencing (WES) data from heterogeneous tumor samples.
|
2025-04-22 |
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validate-fasta-database
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public |
Code for Galaxy tool for quality control on FASTA database
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2025-04-22 |
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quasitools
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public |
Quasitools is a collection of tools for analysing Viral Quasispecies
|
2025-04-22 |
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itsx
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public |
ITSx is an open source software utility to extract the highly variable ITS1 and ITS2 subregions from ITS sequences, which is commonly used as a molecular barcode for e.g. fungi.
|
2025-04-22 |
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ebfilter
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public |
EBFilter (Empirical Bayesian Mutation Filtering)
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2025-04-22 |
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hichipper
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public |
Processing HiChIP data into loops.
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2025-04-22 |
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orthomcl
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public |
Ortholog groups of protein sequences
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2025-04-22 |
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bioconductor-dnashaper
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public |
High-throughput prediction of DNA shape features
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2025-04-22 |
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combined-pvalues
|
public |
A library to combine, analyze, group and correct p-values in BED files.
Unique tools involve correction for spatial autocorrelation.
This is useful for ChIP-Seq probes and Tiling arrays, or any data with spatial correlation.
|
2025-04-22 |
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snvphyl-tools
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public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying
Single Nucleotide Variants (SNV) within a collection of microbial genomes and constructing a phylogenetic tree
|
2025-04-22 |
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bcftools-snvphyl-plugin
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public |
The SNVPhyl (Single Nucleotide Variant PHYLogenomics) pipeline is a pipeline for identifying Single Nucleotide Variants (SNV) within a collection\ of microbial genomes and constructing a phylogenetic tree. This package is the bcftools C plugin
|
2025-04-22 |
