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Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats.

Installers

Info: This package contains files in non-standard labels.
  • osx-64 v0.9.7
  • linux-64 v0.9.7
  • noarch v0.9.7

conda install

To install this package run one of the following:
conda install bioconda::afterqc
conda install bioconda/label/cf201901::afterqc

Description


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