Automatic Filtering, Trimming, Error Removing and Quality Control for fastq data. AfterQC can simply go through all fastq files in a folder and then output three folders: good, bad and QC folders, which contains good reads, bad reads and the QC results of each fastq file/pair. Currently it supports processing data from HiSeq 2000/2500/3000/4000, Nextseq 500/550, MiniSeq...and other Illumina 1.8 or newer formats.


Info: This package contains files in non-standard labels.

conda install

  • linux-64  v0.9.7
  • osx-64  v0.9.7
  • noarch  v0.9.7
To install this package with conda run one of the following:
conda install -c bioconda afterqc
conda install -c bioconda/label/cf201901 afterqc


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