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kissplice
|
public |
A local transcriptome assembler for SNPs, indels and AS events
|
2025-04-22 |
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mapsembler2
|
public |
Targeted assembly software
|
2025-04-22 |
|
mentalist
|
public |
The MLST pipeline developed by the PathOGiST research group.
|
2025-04-22 |
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sis
|
public |
A tool that uses mummer to scaffold small genomes.
|
2025-04-22 |
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bio_hansel
|
public |
Subtype Salmonella enterica genomes using 33bp k-mer typing schemes.
|
2025-04-22 |
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bioconductor-scran
|
public |
Methods for Single-Cell RNA-Seq Data Analysis
|
2025-04-22 |
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bioconductor-biseq
|
public |
Processing and analyzing bisulfite sequencing data
|
2025-04-22 |
|
bioconductor-globaltest
|
public |
Testing Groups of Covariates/Features for Association with a Response Variable, with Applications to Gene Set Testing
|
2025-04-22 |
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bioconductor-simpleaffy
|
public |
Very simple high level analysis of Affymetrix data
|
2025-04-22 |
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bioconductor-jaspar2014
|
public |
Data package for JASPAR
|
2025-04-22 |
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perl-bio-cigar
|
public |
Parse CIGAR strings and translate coordinates to/from reference/query
|
2025-04-22 |
|
perl-types-standard
|
public |
bundled set of built-in types for Type::Tiny
|
2025-04-22 |
|
perl-pod-usage
|
public |
Print a usage message from embedded pod documentation.
|
2025-04-22 |
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xyalign
|
public |
Command line tools and python library to infer ploidy, correct for sex chromosome complement, and work with NGS data
|
2025-04-22 |
|
perl-class-methodmaker
|
public |
Create generic methods for OO Perl
|
2025-04-22 |
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virema
|
public |
ViReMa (Viral Recombination Mapper) detects and reports recombination or fusion events in virus genomes using deep sequencing datasets.
|
2025-04-22 |
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r-george
|
public |
geoRge, a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics
|
2025-04-22 |
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ascat
|
public |
ASCAT is a method to derive copy number profiles of tumour cells,
accounting for normal cell admixture and tumour aneuploidy (Figure 1).
ASCAT infers tumour purity (the fraction of tumour cells) and ploidy (the
amount of DNA per tumour cell, expressed as multiples of haploid genomes)
from SNP array or massively parallel sequencing data, and calculates
whole-genome allele-specific copy number profiles (the number of copies of
both parental alleles for all SNP loci across the genome).
|
2025-04-22 |
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structure
|
public |
The program structure is a free software package for using multi-locus genotype data to investigate population structure. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying hybrid zones, identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals are migrants or admixed. It can be applied to most of the commonly-used genetic markers, including SNPS, microsatellites, RFLPs and AFLPs.
|
2025-04-22 |
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perl-digest-md5-file
|
public |
Perl extension for getting MD5 sums for files and urls.
|
2025-04-22 |
|
breakseq2
|
public |
BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants.
|
2025-04-22 |
|
metfrag
|
public |
MetFrag is a freely available software for the annotation of high precision tandem mass spectra of metabolites which is a first and critical step for the identification of a molecular structure. Candidate molecules of different databases are fragmented in silico and matched against mass to charge values. A score calculated using the fragment peak matches gives hints to the quality of the candidate spectrum assignment.
|
2025-04-22 |
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qcumber
|
public |
Quality control, quality trimming, adapter removal and sequence content check of NGS data.
|
2025-04-22 |
|
bioconductor-methylumi
|
public |
Handle Illumina methylation data
|
2025-04-22 |
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abruijn
|
public |
Long read assembly via A-Bruijn graph
|
2025-04-22 |
