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curlywhirly
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public |
CurlyWhirly is an application for viewing multi-dimensional data, with a particular focus on the outputs of Principle Coordinate Analysis and Principal Components Analysis
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2025-04-22 |
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barrnap-python
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public |
python package for Torsten Seemann's barrnap package for annotating rRNAs
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2025-04-22 |
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bioconductor-chimeraviz
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public |
Visualization tools for gene fusions
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2025-04-22 |
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r-argumentcheck
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public |
The typical process of checking arguments in functions is iterative. In this process, an error may be returned and the user may fix it only to receive another error on a different argument. 'ArgumentCheck' facilitates a more helpful way to perform argument checks allowing the programmer to run all of the checks and then return all of the errors and warnings in a single message.
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2025-04-22 |
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sprai
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public |
Sprai (single-pass read accuracy improver) is a tool to correct sequencing errors in single-pass reads for de novo assembly. It is originally designed for correcting sequencing errors in single-molecule DNA sequencing reads, especially in Continuous Long Reads (CLRs) generated by PacBio RS sequencers. The goal of Sprai is not maximizing the accuracy of error-corrected reads; instead, Sprai aims at maximizing the continuity (i.e., N50 contig length) of assembled contigs after error correction.
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2025-04-22 |
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tirmite
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public |
Map TIR-pHMM models to genomic sequences for annotation of MITES and complete DNA-Transposons.
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2025-04-22 |
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tinscan
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public |
Find alignment signatures characteristic of transposon insertion sites.
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2025-04-22 |
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mimeo
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public |
Scan genomes for internally repeated sequences, elements which are repetitive in another species, or high-identity HGT candidate regions between species.
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2025-04-22 |
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flapjack
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public |
Flapjack provides interactive visualizations of high-throughput genotyping data.
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2025-04-22 |
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tablet
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public |
Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.
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2025-04-22 |
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dupre
|
public |
Duplicate rate estimation using linear programming and the hypergeometric distribution
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2025-04-22 |
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dialign-tx
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public |
DIALIGN-TX is a greedy and progressive approaches for segment-based multiple sequence alignment
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2025-04-22 |
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biskit
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public |
A Python platform for structural bioinformatics.
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2025-04-22 |
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galaxy-ie-helpers
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public |
Helper scripts to work with Galaxy's Interactive Environments
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2025-04-22 |
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galaxy-parsec
|
public |
Command-line utilities to assist in interacting with Galaxy servers (http://galaxyproject.org/).
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2025-04-22 |
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justbackoff
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public |
Simple backoff algorithm in Python
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2025-04-22 |
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pyimzml
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public |
Parser for conversion of imzML 1.1.0 files
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2025-04-22 |
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pyimagingmspec
|
public |
Python library for processing imaging mass spectrometry data
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2025-04-22 |
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afplot
|
public |
Plot allele frequencies in VCF files
|
2025-04-22 |
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bioconductor-annotationfilter
|
public |
Facilities for Filtering Bioconductor Annotation Resources
|
2025-04-22 |
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tadtool
|
public |
TADtool is an interactive tool for the identification of meaningful parameters in TAD-calling algorithms for Hi-C data
|
2025-04-22 |
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bioconductor-metaarray
|
public |
Integration of Microarray Data for Meta-analysis
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2025-04-22 |
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bioconductor-metcirc
|
public |
Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data
|
2025-04-22 |
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bioconductor-rtrmui
|
public |
A shiny user interface for rTRM
|
2025-04-22 |
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bioconductor-pcot2
|
public |
Principal Coordinates and Hotelling's T-Square method
|
2025-04-22 |
