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r-precrec
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public |
Accurate calculations and visualization of precision-recall and ROC (Receiver Operator Characteristics) curves.
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2025-04-22 |
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bioconductor-phosphonormalizer
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public |
Compensates for the bias introduced by median normalization in
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2025-04-22 |
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bioconductor-ndexr
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public |
NDEx R client library
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2025-04-22 |
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bioconductor-multiomicsviz
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public |
Plot the effect of one omics data on other omics data along the chromosome
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2025-04-22 |
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strudel
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public |
Strudel is a graphical tool for visualizing genetic and physical maps of genomes for comparative purposes.
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2025-04-22 |
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bioconductor-jaspar2018
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public |
Data package for JASPAR 2018. To search this databases, please use the package TFBSTools (>= 1.15.6).
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2025-04-22 |
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dx-cwl
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public |
Import and run CWL workflows on DNAnexus
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2025-04-22 |
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bioconductor-genomicdatacommons
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public |
NIH / NCI Genomic Data Commons Access
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2025-04-22 |
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bioconductor-ppinfer
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public |
Inferring functionally related proteins using protein interaction networks
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2025-04-22 |
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bioconductor-heatmaps
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public |
Flexible Heatmaps for Functional Genomics and Sequence Features
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2025-04-22 |
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bioconductor-atacseqqc
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public |
ATAC-seq Quality Control
|
2025-04-22 |
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bioconductor-yeastexpdata
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public |
Yeast Experimental Data
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2025-04-22 |
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bioconductor-chippeakanno
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public |
Batch annotation of the peaks identified from either ChIP-seq, ChIP-chip experiments, or any experiments that result in large number of genomic interval data
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2025-04-22 |
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bioconductor-genomicscores
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public |
Infrastructure to work with genomewide position-specific scores
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2025-04-22 |
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ndex-python
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public |
NDEx Python includes a client and a data model.
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2025-04-22 |
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bioconductor-codex
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public |
A Normalization and Copy Number Variation Detection Method for Whole Exome Sequencing
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2025-04-22 |
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r-genabel
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public |
A package for genome-wide association analysis between quantitative or binary traits and single-nucleotide polymorphisms (SNPs).
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2025-04-22 |
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hicbrowser
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public |
A simple web browser to visualize Hi-C and other genomic tracks (bigwig, bed, interactions).
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2025-04-22 |
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discasm
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public |
DISCASM aims to extract reads that map to reference genomes in a discordant fashion and optionally include reads that do not map to the genome at all, and perform a de novo transcriptome assembly of these reads. DISCASM relies on the output from STAR (as run via STAR-Fusion), and supports de novo transcriptome assembly using Trinity or Oases. - https://github.com/DISCASM/DISCASM/wiki
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2025-04-22 |
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loompy
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public |
Work with .loom files for single-cell RNA-seq data
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2025-04-22 |
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backspinpy
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public |
backSPIN clustering algorythm
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2025-04-22 |
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r-phangorn
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public |
Package contains methods for estimation of phylogenetic trees and networks using Maximum Likelihood, Maximum Parsimony, distance methods and Hadamard conjugation. Allows to compare trees, models selection and offers visualizations for trees and split networks.
|
2025-04-22 |
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lorma
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public |
LoRMA is a tool for correcting sequencing errors in long reads.
|
2025-04-22 |
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ssu-align
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public |
SSU-ALIGN: structural alignment of SSU rRNA sequences
|
2025-04-22 |
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binsanity
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public |
Method to cluster contigs based a biphasic method with coverage and composition
|
2025-04-22 |
