bioconda / packages / bioconductor-metcirc 1.18.0

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.10.0
  • osx-64  v1.10.0
  • noarch  v1.18.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-metcirc
conda install -c bioconda/label/gcc7 bioconductor-metcirc
conda install -c bioconda/label/cf201901 bioconductor-metcirc

Description

MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data. MetCirc uses the Spectrum2 and Spectra infrastructure defined in the package MSnbase that stores MS/MS spectra. MetCirc offers functionality to calculate similarity between precursors based on the normalised dot product, neutral losses or user-defined functions and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.

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