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bioconda / packages / bioconductor-metcirc 1.32.0

Navigating mass spectral similarity in high-resolution MS/MS metabolomics data metabolomics data

Installers

Info: This package contains files in non-standard labels.
  • linux-64 v1.10.0
  • osx-64 v1.10.0
  • noarch v1.32.0

conda install

To install this package run one of the following:
conda install bioconda::bioconductor-metcirc
conda install bioconda/label/cf201901::bioconductor-metcirc
conda install bioconda/label/gcc7::bioconductor-metcirc

Description

MetCirc comprises a workflow to interactively explore high-resolution MS/MS metabolomics data. MetCirc uses the Spectra object infrastructure defined in the package Spectra that stores MS/MS spectra. MetCirc offers functionality to calculate similarity between precursors based on the normalised dot product, neutral losses or user-defined functions and visualise similarities in a circular layout. Within the interactive framework the user can annotate MS/MS features based on their similarity to (known) related MS/MS features.


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