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riboseq-rust
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public |
Ribo-seq Unit Step Transformation. Tools to characterise the determinants of ribosome profiling read density across mRNA. May be used to examine relative decoding rates and and for quality assessment
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2025-04-22 |
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bioconductor-variancepartition
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public |
Quantify and interpret drivers of variation in multilevel gene expression experiments
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2025-04-22 |
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bioconductor-starbiotrek
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public |
StarBioTrek
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2025-04-22 |
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bioconductor-spidermir
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public |
SpidermiR: An R/Bioconductor package for integrative network analysis with miRNA data
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2025-04-22 |
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bioconductor-tcgabiolinks
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public |
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
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2025-04-22 |
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umitools
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public |
A toolset for handling sequencing data with unique molecular identifiers (UMIs)
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2025-04-22 |
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bioconductor-basecallqc
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public |
Working with Illumina Basecalling and Demultiplexing input and output files
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2025-04-22 |
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bioconductor-dss
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public |
Dispersion shrinkage for sequencing data
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2025-04-22 |
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bioconductor-imas
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public |
Integrative analysis of Multi-omics data for Alternative Splicing
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2025-04-22 |
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perl-moosex-types-path-tiny
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public |
MooseX::Types::Path::Tiny - Path::Tiny types and coercions for Moose
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2025-04-22 |
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porechop
|
public |
Adapter removal and demultiplexing of Oxford Nanopore reads
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2025-04-22 |
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bioconductor-flowploidy
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public |
Analyze flow cytometer data to determine sample ploidy
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2025-04-22 |
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bioconductor-ivas
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public |
Identification of genetic Variants affecting Alternative Splicing
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2025-04-22 |
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bioconductor-rnaither
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public |
Statistical analysis of high-throughput RNAi screens
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2025-04-22 |
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bioconductor-rankprod
|
public |
Rank Product method for identifying differentially expressed genes with application in meta-analysis
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2025-04-22 |
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bioconductor-scnorm
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public |
Normalization of single cell RNA-seq data
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2025-04-22 |
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sierrapy
|
public |
A Client of HIVdb Sierra GraphQL Webservice.
|
2025-04-22 |
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bioconductor-ideal
|
public |
Interactive Differential Expression AnaLysis
|
2025-04-22 |
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bioconductor-motifcounter
|
public |
R package for analysing TFBSs in DNA sequences
|
2025-04-22 |
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r-tcga2stat
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public |
Automatically downloads and processes TCGA genomics and clinical data into a format convenient for statistical analyses in the R environment.
|
2025-04-22 |
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irida-sistr-results
|
public |
Exports SISTR results available through IRIDA into a single report.
|
2025-04-22 |
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r-adegenet
|
public |
Toolset for the exploration of genetic and genomic data. Adegenet provides formal (S4) classes for storing and handling various genetic data, including genetic markers with varying ploidy and hierarchical population structure ('genind' class), alleles counts by populations ('genpop'), and genome-wide SNP data ('genlight'). It also implements original multivariate methods (DAPC, sPCA), graphics, statistical tests, simulation tools, distance and similarity measures, and several spatial methods. A range of both empirical and simulated datasets is also provided to illustrate various methods.
|
2025-04-22 |
|
downpore
|
public |
Suite of tools for use in genome assembly and consensus.
|
2025-04-22 |
|
r-gwpcr
|
public |
Implements the necessary distributions and parameter estimation procedures for a model of amplification and high-troughput sequencing. The model is based on a mechanistic model of PCR amplification as a Galton-Watson branching process, and on Poissonan sampling to model high-throughput sequencing.
|
2025-04-22 |
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readseq
|
public |
Read & reformat biosequences, Java command-line version
|
2025-04-22 |
