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bioconductor-sc3
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public |
Single-Cell Consensus Clustering
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2025-04-22 |
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snmf
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public |
Fast and efficient program for estimating individual admixture coefficients based on sparse non-negative matrix factorization and population genetics
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2025-04-22 |
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xtail
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public |
Genome-wide assessment of differential translations with ribosome profiling data
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2025-04-22 |
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dsh-bio
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public |
Tools for BED, FASTA, FASTQ, GAF, GFA1/2, GFF3, PAF, SAM, and VCF files
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2025-04-22 |
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bioconductor-genomeintervals
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public |
Operations on genomic intervals
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2025-04-22 |
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mirtop
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public |
Small RNA-seq annotation.
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2025-04-22 |
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hts-nim-tools
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public |
useful command-line tools written to show-case hts-nim
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2025-04-22 |
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clove
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public |
CLOVE: Classification of genomic fusions into structural variation events.
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2025-04-22 |
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biolite
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public |
A lightweight bioinformatics framework with automated tracking of diagnostics and provenance.
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2025-04-22 |
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biolite-tools
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public |
C++ tools for biolite, a lightweight bioinformatics framework with automated tracking of diagnostics and provenance.
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2025-04-22 |
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dimspy
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public |
Python package for data processing of direct-infusion mass spectrometry-based metabolomics and lipidomics data
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2025-04-22 |
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gmap-fusion
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public |
GMAP-fusion is a utility for identifying candidate fusion transcripts based on transcript sequences reconstructed via RNA-Seq de novo transcriptome assembly.
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2025-04-22 |
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fusion-inspector
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public |
FusionInspector is a component of the Trinity Cancer Transcriptome Analysis Toolkit (CTAT). FusionInspector assists in fusion transcript discovery by performing a supervised analysis of fusion predictions, attempting to recover and re-score evidence for such predictions. - https://github.com/FusionInspector/FusionInspector/wiki
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2025-04-22 |
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seroba
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public |
SeroBA is a k-mer based Pipeline to identify the Serotype from Illumina NGS reads for given references.
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2025-04-22 |
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r-biomark
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public |
Variable selection methods are provided for several classification methods: the lasso/elastic net, PCLDA, PLSDA, and several t-tests. Two approaches for selecting cutoffs can be used, one based on the stability of model coefficients under perturbation, and the other on higher criticism.
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2025-04-22 |
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bioconductor-rtcga.mrna
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public |
mRNA datasets from The Cancer Genome Atlas Project
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2025-04-22 |
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bioconductor-rtcga
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public |
The Cancer Genome Atlas Data Integration
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2025-04-22 |
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perl-http-server-simple
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public |
Lightweight HTTP server
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2025-04-22 |
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a5-miseq
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public |
A5-miseq is a pipeline for assembling DNA sequence data generated on the Illumina sequencing platform. This README will take you through the steps necessary for running _A5-miseq_
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2025-04-22 |
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novobreak
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public |
local assembly for breakpoint detection in cancer genomes
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2025-04-22 |
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bioconductor-genefu
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public |
Computation of Gene Expression-Based Signatures in Breast Cancer
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2025-04-22 |
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bioconductor-cancersubtypes
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public |
Cancer subtypes identification, validation and visualization based on multiple genomic data sets
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2025-04-22 |
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bioconductor-srap
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public |
Simplified RNA-Seq Analysis Pipeline
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2025-04-22 |
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bioconductor-baalchip
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public |
BaalChIP: Bayesian analysis of allele-specific transcription factor binding in cancer genomes
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2025-04-22 |
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bioconductor-mirnatap.db
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public |
This package holds the database for miRNAtap.
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2025-04-22 |
