bioconda / packages / bioconductor-tcgabiolinks 2.16.0

TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v2.8.4
  • osx-64  v2.8.4
  • noarch  v2.16.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-tcgabiolinks
conda install -c bioconda/label/gcc7 bioconductor-tcgabiolinks
conda install -c bioconda/label/cf201901 bioconductor-tcgabiolinks

Description

The aim of TCGAbiolinks is : i) facilitate the GDC open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

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