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bioconductor-tcgabiolinks

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TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Installation

To install this package, run one of the following:

Conda
$conda install bioconda::bioconductor-tcgabiolinks

Usage Tracking

2.34.0
2.30.0
2.28.3
2.25.3
2.22.1
5 / 8 versions selected
Downloads (Last 6 months): 0

Description

The aim of TCGAbiolinks is : i) facilitate the GDC open-access data retrieval, ii) prepare the data using the appropriate pre-processing strategies, iii) provide the means to carry out different standard analyses and iv) to easily reproduce earlier research results. In more detail, the package provides multiple methods for analysis (e.g., differential expression analysis, identifying differentially methylated regions) and methods for visualization (e.g., survival plots, volcano plots, starburst plots) in order to easily develop complete analysis pipelines.

About

Summary

TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data

Last Updated

Dec 21, 2024 at 08:16

License

GPL (>= 3)

Total Downloads

40.7K

Supported Platforms

noarch

Unsupported Platforms

linux-64 Last supported version: 2.8.4
macOS-64 Last supported version: 2.8.4