| Package Name | Access | Summary | Updated |
|---|---|---|---|
| bioconductor-lola | public | Locus overlap analysis for enrichment of genomic ranges | 2025-04-22 |
| bioconductor-logitt | public | logit-t Package | 2025-04-22 |
| bioconductor-drivernet | public | Drivernet: uncovering somatic driver mutations modulating transcriptional networks in cancer | 2025-04-22 |
| bioconductor-dupchecker | public | a package for checking high-throughput genomic data redundancy in meta-analysis | 2025-04-22 |
| bioconductor-dyebias | public | The GASSCO method for correcting for slide-dependent gene-specific dye bias | 2025-04-22 |
| octopus | public | Octopus is a mapping-based variant caller that implements several calling models within a unified haplotype-aware framework. | 2025-04-22 |
| bioconductor-dyndoc | public | Dynamic document tools | 2025-04-22 |
| bioconductor-dta | public | Dynamic Transcriptome Analysis | 2025-04-22 |
| bioconductor-ebsea | public | Exon Based Strategy for Expression Analysis of genes | 2025-04-22 |
| bioconductor-mmdiff2 | public | Statistical Testing for ChIP-Seq data sets | 2025-04-22 |
| bioconductor-mlseq | public | Machine Learning Interface for RNA-Seq Data | 2025-04-22 |
| perl-cairo | public | Perl interface to the cairo 2d vector graphics library | 2025-04-22 |
| perl-extutils-depends | public | Easily build XS extensions that depend on XS extensions. | 2025-04-22 |
| perl-extutils-pkgconfig | public | simplistic interface to pkg-config | 2025-04-22 |
| treemaker | public | A python tool for generating a Newick formatted tree from alist of classifications | 2025-04-22 |
| bioconductor-orderedlist | public | Similarities of Ordered Gene Lists | 2025-04-22 |
| bioconductor-geneplast | public | Evolutionary and plasticity analysis of orthologous groups | 2025-04-22 |
| nucdiff | public | NucDiff locates and categorizes differences between two closely related nucleotide sequences. | 2025-04-22 |
| bioconductor-plpe | public | Local Pooled Error Test for Differential Expression with Paired High-throughput Data | 2025-04-22 |
| bioconductor-lpe | public | Methods for analyzing microarray data using Local Pooled Error (LPE) method | 2025-04-22 |
| bioconductor-philr | public | Phylogenetic partitioning based ILR transform for metagenomics data | 2025-04-22 |
| bioconductor-pbcmc | public | The pbcmc package characterizes uncertainty assessment on gene expression classifiers, a. k. a. molecular signatures, based on a permutation test. In order to achieve this goal, synthetic simulated subjects are obtained by permutations of gene labels. Then, each synthetic subject is tested against the corresponding subtype classifier to build the null distribution. Thus, classification confidence measurement can be provided for each subject, to assist physician therapy choice. At present, it is only available for PAM50 implementation in genefu package but it can easily be extend to other molecular signatures. | 2025-04-22 |
| bioconductor-generegionscan | public | GeneRegionScan | 2025-04-22 |
| bioconductor-proteomicsannotationhubdata | public | Transform public proteomics data resources into Bioconductor Data Structures | 2025-04-22 |
| bioconductor-annotationhubdata | public | Transform public data resources into Bioconductor Data Structures | 2025-04-22 |
