bioconda / packages / bioconductor-lpe 1.62.0

Methods for analyzing microarray data using Local Pooled Error (LPE) method

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.54.0
  • noarch  v1.62.0
  • osx-64  v1.54.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-lpe
conda install -c bioconda/label/gcc7 bioconductor-lpe
conda install -c bioconda/label/cf201901 bioconductor-lpe

Description

This LPE library is used to do significance analysis of microarray data with small number of replicates. It uses resampling based FDR adjustment, and gives less conservative results than traditional 'BH' or 'BY' procedures. Data accepted is raw data in txt format from MAS4, MAS5 or dChip. Data can also be supplied after normalization. LPE library is primarily used for analyzing data between two conditions. To use it for paired data, see LPEP library. For using LPE in multiple conditions, use HEM library.

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