bioconda / packages / bioconductor-geneplast 1.14.0

Evolutionary and plasticity analysis of orthologous groups

Installers

Info: This package contains files in non-standard labels.

conda install

  • linux-64  v1.6.2
  • osx-64  v1.6.2
  • noarch  v1.14.0
To install this package with conda run one of the following:
conda install -c bioconda bioconductor-geneplast
conda install -c bioconda/label/gcc7 bioconductor-geneplast
conda install -c bioconda/label/cf201901 bioconductor-geneplast

Description

Geneplast is designed for evolutionary and plasticity analysis based on orthologous groups distribution in a given species tree. It uses Shannon information theory and orthologs abundance to estimate the Evolutionary Plasticity Index. Additionally, it implements the Bridge algorithm to determine the evolutionary root of a given gene based on its orthologs distribution.

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