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bioconductor-rnbeads.mm10
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public |
RnBeads.mm10
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2025-04-22 |
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bioconductor-rnbeads.mm9
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public |
RnBeads.mm9
|
2025-04-22 |
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bioconductor-rnbeads.rn5
|
public |
RnBeads.rn5
|
2025-04-22 |
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pydnase
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public |
DNase-seq analysis library
|
2025-04-22 |
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dedup
|
public |
DeDup is a tool for read deduplication in paired-end read merging (e.g. for ancient DNA experiments).
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2025-04-22 |
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clipandmerge
|
public |
Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together.
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2025-04-22 |
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adapterremoval
|
public |
The AdapterRemoval v2 tool for merging and clipping reads.
|
2025-04-22 |
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metasnv
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public |
SNV calling software
|
2025-04-22 |
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bioconductor-trackviewer
|
public |
A R/Bioconductor package with web interface for drawing elegant interactive tracks or lollipop plot to facilitate integrated analysis of multi-omics data
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2025-04-22 |
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feelnc
|
public |
FlExible Extraction of LncRNA
|
2025-04-22 |
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quicksect
|
public |
A cythonized, extended version of the interval search tree in bx
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2025-04-22 |
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smoove
|
public |
structural variant calling and genotyping with existing tools, but, smoothly
|
2025-04-22 |
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kmerinshort
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public |
KmerInShort counts kmers from a fasta/fastq file or list of files, and outputs results in a text file. It is limited to short kmers (k<15). It is a part of the FEELnc pipeline (V.Wucher et al.)
|
2025-04-22 |
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catch
|
public |
A package for designing compact and comprehensive capture probe sets.
|
2025-04-22 |
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perl-sys-sigaction
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public |
Perl extension for Consistent Signal Handling
|
2025-04-22 |
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rnasketch
|
public |
RNAsketch Library for designing RNA molecules. Glue between RNAblueprint/RNARedPrint and ViennaRNA, Nupack, Hotknots, pKiss.
|
2025-04-22 |
|
rnablueprint
|
public |
The RNAblueprint library solves the problem of uniformly sampling RNA/DNA sequences compatible to multiple structural constraints and sequence constraints.
|
2025-04-22 |
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shmlast
|
public |
conditional reciprocal best hits with LAST
|
2025-04-22 |
|
rnachipintegrator
|
public |
Analyse genes against peak data, and vice versa
|
2025-04-22 |
|
bxtools
|
public |
Tools for analyzing 10X Genomics data
|
2025-04-22 |
|
ephemeris
|
public |
Ephemeris is an opinionated library and set of scripts for managing the bootstrapping of Galaxy project plugins - tools, index data, and workflows.
|
2025-04-22 |
|
gxformat2
|
public |
Galaxy Workflow Format 2 Descriptions
|
2025-04-22 |
|
trumicount
|
public |
For NGS experiments using unique molecular identifiers (UMIs), molecules that are lost entirely during sequencing cause under- estimation of the molecule count, and amplification artifacts like PCR chimeras cause over-estimation. TRUmiCount corrects UMI data for both types of errors, thus improving the accuracy of measured molecule counts considerably.
|
2025-04-22 |
|
prophex
|
public |
The ProPhex k-mer index.
|
2025-04-22 |
|
pal_finder
|
public |
Find microsatellite repeat elements from sequencing reads and design PCR primers to amplify them
|
2025-04-22 |
