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bioconductor-mwastools
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public |
MWASTools: an integrated pipeline to perform metabolome-wide association studies
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2024-12-22 |
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bioconductor-podkat
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public |
Position-Dependent Kernel Association Test
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2024-12-22 |
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gtdbtk
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public |
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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2024-12-22 |
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bioconductor-zfpkm
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public |
A suite of functions to facilitate zFPKM transformations
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2024-12-22 |
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bioconductor-biosigner
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public |
Signature discovery from omics data
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2024-12-22 |
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bioconductor-ropls
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public |
PCA, PLS(-DA) and OPLS(-DA) for multivariate analysis and feature selection of omics data
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2024-12-22 |
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bioconductor-regsplice
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public |
L1-regularization based methods for detection of differential splicing
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2024-12-22 |
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bioconductor-lobstahs
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public |
Lipid and Oxylipin Biomarker Screening through Adduct Hierarchy Sequences
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2024-12-22 |
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bioconductor-metams
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public |
MS-based metabolomics annotation pipeline
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2024-12-22 |
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bioconductor-ipo
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public |
Automated Optimization of XCMS Data Processing parameters
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2024-12-22 |
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bioconductor-singlecellexperiment
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public |
S4 Classes for Single Cell Data
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2024-12-22 |
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r-george
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public |
geoRge, a computational tool for stable isotope labelling detection in LC/MS-based untargeted metabolomics
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2024-12-22 |
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bioconductor-faahko
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public |
Saghatelian et al. (2004) FAAH knockout LC/MS data
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2024-12-22 |
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bioconductor-oligoclasses
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public |
Classes for high-throughput arrays supported by oligo and crlmm
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2024-12-22 |
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bioconductor-made4
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public |
Multivariate analysis of microarray data using ADE4
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2024-12-22 |
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r-alakazam
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public |
Provides methods for high-throughput adaptive immune receptor repertoire sequencing (AIRR-Seq; Rep-Seq) analysis. In particular, immunoglobulin (Ig) sequence lineage reconstruction, lineage topology analysis, diversity profiling, amino acid property analysis and gene usage. Citations: Gupta and Vander Heiden, et al (2017) <doi:10.1093/bioinformatics/btv359>, Stern, Yaari and Vander Heiden, et al (2014) <doi:10.1126/scitranslmed.3008879>.
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2024-12-22 |
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bioconductor-multidataset
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public |
Implementation of MultiDataSet and ResultSet
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2024-12-22 |
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bioconductor-msmseda
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public |
Exploratory Data Analysis of LC-MS/MS data by spectral counts
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2024-12-22 |
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bioconductor-mbased
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public |
Package containing functions for ASE analysis using Meta-analysis Based Allele-Specific Expression Detection
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2024-12-21 |
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bioconductor-synapter
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public |
Label-free data analysis pipeline for optimal identification and quantitation
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2024-12-21 |
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r-msqrob
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public |
Robust statistical inference for quantitative LC-MS proteomics.
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2024-12-21 |
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bioconductor-microbiome
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public |
Microbiome Analytics
|
2024-12-21 |
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bioconductor-rpa
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public |
RPA: Robust Probabilistic Averaging for probe-level analysis
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2024-12-21 |
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bioconductor-phyloseq
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public |
Handling and analysis of high-throughput microbiome census data
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2024-12-21 |
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pantools
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public |
PanTools is a pangenomic toolkit for comparative analysis of large numbers of genomes.
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2024-12-21 |
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cooler
|
public |
Sparse binary format for genomic interaction matrices.
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2024-12-21 |
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multiqc
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public |
Create aggregate bioinformatics analysis reports across many samples and tools.
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2024-12-21 |
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bioconductor-panther.db
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public |
A set of annotation maps describing the entire PANTHER Gene Ontology
|
2024-12-21 |
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bioconductor-blima
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public |
Tools for the preprocessing and analysis of the Illumina microarrays on the detector (bead) level
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2024-12-21 |
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bioconductor-experimenthub
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public |
Client to access ExperimentHub resources
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2024-12-21 |
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bioconductor-yamss
|
public |
Tools for high-throughput metabolomics
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2024-12-21 |
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bioconductor-chronos
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public |
CHRONOS: A time-varying method for microRNA-mediated sub-pathway enrichment analysis
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2024-12-21 |
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bioconductor-tcgabiolinks
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public |
TCGAbiolinks: An R/Bioconductor package for integrative analysis with GDC data
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2024-12-21 |
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bioconductor-ppinfer
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public |
Inferring functionally related proteins using protein interaction networks
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2024-12-21 |
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bioconductor-aldex2
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public |
Analysis Of Differential Abundance Taking Sample and Scale Variation Into Account
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2024-12-21 |
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r-cimpl
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public |
No Summary
|
2024-12-21 |
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bioconductor-swath2stats
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public |
Transform and Filter SWATH Data for Statistical Packages
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2024-12-21 |
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bioconductor-chromplot
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public |
Global visualization tool of genomic data
|
2024-12-21 |
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bioconductor-qdnaseq
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public |
Quantitative DNA Sequencing for Chromosomal Aberrations
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2024-12-21 |
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bioconductor-beadarray
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public |
Quality assessment and low-level analysis for Illumina BeadArray data
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2024-12-21 |
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bioconductor-cn.mops
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public |
cn.mops - Mixture of Poissons for CNV detection in NGS data
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2024-12-21 |
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r-rblast
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public |
Seamlessly interfaces the Basic Local Alignment Search Tool (BLAST) to search genetic sequence data bases. This work was partially supported by grant no. R21HG005912 from the National Human Genome Research Institute.
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2024-12-21 |
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bioconductor-affyplm
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public |
Methods for fitting probe-level models
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2024-12-21 |
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rad_haplotyper
|
public |
A program for building SNP haplotypes from RAD sequencing data
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2024-12-21 |
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bioconductor-rontotools
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public |
R Onto-Tools suite
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2024-12-21 |
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eden
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public |
No Summary
|
2024-12-21 |
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bioconductor-biomformat
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public |
An interface package for the BIOM file format
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2024-12-21 |
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kraken2
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public |
Kraken2 is a system for assigning taxonomic labels to short DNA sequences, usually obtained through metagenomic studies.
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2024-12-21 |
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r-wasabi
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public |
Prepare Sailfish and Salmon output for downstream analysis
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2024-12-21 |
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mlst
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public |
Scan contig files against PubMLST typing schemes
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2024-12-21 |
