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dnp-fourier
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public |
Periodogram of dinucleotide frequency pattern
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2025-04-22 |
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dnp-diprofile
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public |
Dinucleotide frequency of occurrence in a batch of fasta sequences
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2025-04-22 |
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dnp-corrprofile
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public |
Profile of correlations between the patterns of dinucleotide frequency on forward and reverse strands
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2025-04-22 |
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dnp-binstrings
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public |
Convert fasta strings into dinucleotide binary indicator string as 00101...
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2025-04-22 |
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hmftools-purple
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public |
PURPLE is a purity ploidy estimator for tumor samples.
|
2025-04-22 |
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htstream
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public |
HTStream is a quality control and processing pipeline for High Throughput Sequencing data.
The difference between HTStream and other tools is that HTStream uses a tab delimited fastq format that allows for streaming from application to application.
This streaming creates some awesome efficiencies when processing HTS data and makes it fully interoperable with other standard Linux tools.
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2025-04-22 |
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gtdbtk
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public |
A toolkit for assigning objective taxonomic classifications to bacterial and archaeal genomes.
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2025-04-22 |
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bazam
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public |
A tool to extract paired reads in FASTQ format from coordinate sorted BAM files
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2025-04-22 |
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anvio-minimal
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public |
An interactive analysis and visualization platform for omics data
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2025-04-22 |
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perl-bio-automatedannotation
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public |
Automated annotation of assemblies
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2025-04-22 |
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fsm-lite
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public |
Frequency-based String Mining (lite)
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2025-04-22 |
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purge_haplotigs
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public |
Pipeline to help with curating heterozygous diploid genome assemblies.
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2025-04-22 |
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rfmix
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public |
RFMix implements a fast discriminative approach to modeling ancestry along an admixed chromosome given observed haplotype sequences of known or inferred ancestry.
|
2025-04-22 |
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perl-gtdbtk
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public |
Perl script and dependent library files required for GTDB-Tk.
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2025-04-22 |
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tinyfasta
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public |
Tiny Python package, with no external dependencies, for parsing FASTA sequence files.
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2025-04-22 |
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popdel
|
public |
Fast structural deletion calling on population-scale short read paired-end germline WGS data.
|
2025-04-22 |
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kinsimriboswitch
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public |
Pipeline for the simulation of RNA--ligand interaction kinetics as
outlined in Kuehnl et al. 2017, https://doi.org/10.1186/s12859-017-1823-5
|
2025-04-22 |
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nf-core
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public |
Python package with helper tools for the nf-core community.
|
2025-04-22 |
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r-msqrob
|
public |
Robust statistical inference for quantitative LC-MS proteomics.
|
2025-04-22 |
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tracy
|
public |
Basecalling, alignment, assembly and deconvolution of Sanger chromatogram trace files
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2025-04-22 |
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rapidnj
|
public |
RapidNJ is an algorithmic engineered implementation of canonical neighbour-joining. It uses an efficient search heuristic to speed-up the core computations of the neighbour-joining method that enables RapidNJ to outperform other state-of-the-art neighbour-joining implementations.
|
2025-04-22 |
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r-dgeclustering
|
public |
DGEclustering is an R package for multidimensional clustering of differential gene expression datasets, and it integrates GO annotations to improve the clustering result.
|
2025-04-22 |
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bioconductor-sc3-scripts
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public |
A set of wrappers for individual components of the SC3 package. Functions R packages are hard to call when building workflows outside of R, so this package adds a set of simple wrappers with robust argument parsing. Intermediate steps are currently mainly serialized R objects, but the ultimate objective is to have language-agnostic intermediate formats allowing composite workflows using a variety of software packages.
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2025-04-22 |
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admixture
|
public |
ADMIXTURE is a software tool for maximum likelihood estimation of individual ancestries from multilocus SNP genotype datasets.
|
2025-04-22 |
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revtrans
|
public |
revtrans - performs a reverse translation of a peptide alignment.
|
2025-04-22 |
