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bioconductor-genebreak
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public |
Gene Break Detection
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2024-12-24 |
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bioconductor-mirage
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public |
MiRNA Ranking by Gene Expression
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2024-12-24 |
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bioconductor-annotate
|
public |
Annotation for microarrays
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2024-12-24 |
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bioconductor-graphite
|
public |
GRAPH Interaction from pathway Topological Environment
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2024-12-24 |
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bioconductor-meshdbi
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public |
DBI to construct MeSH-related package from sqlite file
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2024-12-24 |
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bioconductor-mirbaseversions.db
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public |
Annotation package containing all available miRNA names from 22 versions (data from http://www.mirbase.org/).
|
2024-12-24 |
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bioconductor-org.rn.eg.db
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public |
Genome wide annotation for Rat
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2024-12-24 |
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bioconductor-do.db
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public |
A set of annotation maps describing the entire Disease Ontology assembled using data from DO
|
2024-12-24 |
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bioconductor-org.dr.eg.db
|
public |
Genome wide annotation for Zebrafish
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2024-12-24 |
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bioconductor-org.ss.eg.db
|
public |
Genome wide annotation for Pig
|
2024-12-23 |
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bioconductor-org.gg.eg.db
|
public |
Genome wide annotation for Chicken
|
2024-12-23 |
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bioconductor-org.dm.eg.db
|
public |
Genome wide annotation for Fly
|
2024-12-23 |
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pylibseq
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public |
A Python interface to libsequence
|
2024-12-23 |
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ghostx
|
public |
GHOSTX is a homology search tool which can detect remote homologues like BLAST and is about 100 times more efficient than BLAST by using suffix arrays. GHOSTX outputs search results in the format similar to BLAST-tabular format.
|
2024-12-23 |
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bioconductor-org.ce.eg.db
|
public |
Genome wide annotation for Worm
|
2024-12-23 |
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bioconductor-annotationforge
|
public |
Tools for building SQLite-based annotation data packages
|
2024-12-23 |
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bioconductor-org.cf.eg.db
|
public |
Genome wide annotation for Canine
|
2024-12-23 |
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bioconductor-org.sc.sgd.db
|
public |
Genome wide annotation for Yeast
|
2024-12-23 |
|
bioconductor-rtrm
|
public |
Identification of Transcriptional Regulatory Modules from Protein-Protein Interaction Networks
|
2024-12-23 |
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bioconductor-cn.farms
|
public |
cn.FARMS - factor analysis for copy number estimation
|
2024-12-23 |
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bioconductor-mlp
|
public |
Mean Log P Analysis
|
2024-12-23 |
|
bioconductor-safe
|
public |
Significance Analysis of Function and Expression
|
2024-12-23 |
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bioconductor-org.bt.eg.db
|
public |
Genome wide annotation for Bovine
|
2024-12-23 |
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bioconductor-frma
|
public |
Frozen RMA and Barcode
|
2024-12-23 |
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bioconductor-reactome.db
|
public |
A set of annotation maps for reactome
|
2024-12-23 |
|
r-cellassign
|
public |
Automated, probabilistic assignment of cell types in scRNA-seq data
|
2024-12-23 |
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bioconductor-pdinfobuilder
|
public |
Platform Design Information Package Builder
|
2024-12-23 |
|
bioconductor-org.hs.eg.db
|
public |
Genome wide annotation for Human
|
2024-12-23 |
|
bioconductor-bionet
|
public |
Routines for the functional analysis of biological networks
|
2024-12-23 |
|
bioconductor-m3drop
|
public |
Michaelis-Menten Modelling of Dropouts in single-cell RNASeq
|
2024-12-23 |
|
bioconductor-pathrender
|
public |
Render molecular pathways
|
2024-12-23 |
|
bioconductor-rmir.hs.mirna
|
public |
Various databases of microRNA Targets
|
2024-12-23 |
|
bioconductor-pfam.db
|
public |
A set of protein ID mappings for PFAM
|
2024-12-23 |
|
bioconductor-targetscan.hs.eg.db
|
public |
TargetScan miRNA target predictions for human assembled using data from the TargetScan website. TargetScan predicts biological targets of miRNAs by searching for the presence of conserved 8mer and 7mer sites that match the seed region of each miRNA. Also identified are sites with mismatches in the seed region that are compensated by conserved 3' pairing. In mammals, predictions are ranked based on the predicted efficacy of targeting as calculated using the context scores of the sites.
|
2024-12-23 |
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bioconductor-go.db
|
public |
A set of annotation maps describing the entire Gene Ontology
|
2024-12-23 |
|
bioconductor-scater
|
public |
Single-Cell Analysis Toolkit for Gene Expression Data in R
|
2024-12-23 |
|
bioconductor-splatter
|
public |
Simple Simulation of Single-cell RNA Sequencing Data
|
2024-12-23 |
|
bioconductor-hpar
|
public |
Human Protein Atlas in R
|
2024-12-22 |
|
bioconductor-org.mm.eg.db
|
public |
Genome wide annotation for Mouse
|
2024-12-22 |
|
bioconductor-puma
|
public |
Propagating Uncertainty in Microarray Analysis(including Affymetrix tranditional 3' arrays and exon arrays and Human Transcriptome Array 2.0)
|
2024-12-22 |
|
bioconductor-mirnatap
|
public |
miRNAtap: microRNA Targets - Aggregated Predictions
|
2024-12-22 |
|
bioconductor-msnid
|
public |
Utilities for Exploration and Assessment of Confidence of LC-MSn Proteomics Identifications
|
2024-12-22 |
|
bioconductor-cosmiq
|
public |
cosmiq - COmbining Single Masses Into Quantities
|
2024-12-22 |
|
bioconductor-arrayexpress
|
public |
Access the ArrayExpress Collection at EMBL-EBI Biostudies and build Bioconductor data structures: ExpressionSet, AffyBatch, NChannelSet
|
2024-12-22 |
|
bioconductor-genomicscores
|
public |
Infrastructure to work with genomewide position-specific scores
|
2024-12-22 |
|
desman
|
public |
De novo Extraction of Strains from MetAgeNomes
|
2024-12-22 |
|
bioconductor-gcrisprtools
|
public |
Suite of Functions for Pooled Crispr Screen QC and Analysis
|
2024-12-22 |
|
bioconductor-oligo
|
public |
Preprocessing tools for oligonucleotide arrays
|
2024-12-22 |
|
bioconductor-grmetrics
|
public |
Calculate growth-rate inhibition (GR) metrics
|
2024-12-22 |
|
bioconductor-geoquery
|
public |
Get data from NCBI Gene Expression Omnibus (GEO)
|
2024-12-22 |
